Rubus

Rubus

Scientific Name	Rubus [TAX:23216]
Lineage	cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis

Known viruses (15)

Scientific Name	Beet ringspot virus [TAX:191547]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus betae
RefSeq	NC_003693 Beet ringspot virus RNA 1, complete sequence. NC_003694 Beet ringspot virus RNA 2, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003693 NC_003694 ICTV: 202302102 ViralZone: family, genus Plant Viruses Online: 823

Scientific Name	Blackberry chlorotic ringspot virus [TAX:339420]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Bromoviridae; Ilarvirus
RefSeq	NC_011553 Blackberry chlorotic ringspot virus RNA1, complete genome. NC_011554 Blackberry chlorotic ringspot virus RNA2, complete genome. NC_011555 Blackberry chlorotic ringspot virus.
DBLINKS	KEGG BRITE: NC_011553 NC_011554 NC_011555 ICTV: 202302780

Scientific Name	blackberry leaf mottle-associated virus [TAX:3070201]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Fimoviridae; Emaravirus; Emaravirus rubi
RefSeq	NC_078032 Blackberry leaf mottle associated virus isolate Arkansas movement protein (P4) gene, complete cds. NC_078033 Blackberry leaf mottle associated virus isolate Arkansas RNA-dependent RNA polymerase (P1) gene, complete cds. NC_078034 Blackberry leaf mottle associated virus isolate Arkansas hypothetical protein (P5) gene, complete cds. NC_078035 Blackberry leaf mottle associated virus isolate Arkansas nucleocapsid protein (P3) gene, complete cds. NC_078036 Blackberry leaf mottle associated virus isolate Arkansas glycoprotein precursor (P2) gene, complete cds.
Evidence	Literature
Reference	PMID: 28396285
Authors	Hassan M, Di Bello PL, Keller KE, Martin RR, Sabanadzovic S, Tzanetakis IE
Title	A new, widespread emaravirus discovered in blackberry.
Journal	Virus Res. 2017 May 2;235:1-5.
DBLINKS	KEGG BRITE: NC_078032 NC_078033 NC_078034 NC_078035 NC_078036 ICTV: 202307357 ViralZone: genus, family

Scientific Name	Blackberry vein banding-associated virus [TAX:1381464]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Ampelovirus
RefSeq	NC_022072 Blackberry vein banding associated virus isolate Mississippi1, complete genome.
DBLINKS	KEGG BRITE: NC_022072 ICTV: 202302981

Scientific Name	Blackberry virus A [TAX:2185086]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus
RefSeq	NC_040630 Blackberry virus A isolate Arkansas, complete genome.
Evidence	Literature
Reference	PMID: 29987381
Authors	Hassan M, Shahid MS, Tzanetakis IE
Title	Molecular characterization and detection of a novel vitivirus infecting blackberry.
Journal	Arch Virol. 2018 Oct;163(10):2889-2893.
DBLINKS	KEGG BRITE: NC_040630 ICTV: 202306439

Scientific Name	Blackberry virus E [TAX:1043184]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Allexivirus
RefSeq	NC_015706 Blackberry virus E, complete genome.
Evidence	Literature
Reference	PMID: 21656298
Authors	Sabanadzovic S, Abou Ghanem-Sabanadzovic N, Tzanetakis IE
Title	Blackberry virus E: an unusual flexivirus.
Journal	Arch Virol. 2011 Sep;156(9):1665-9.
Comment	Blackberry virus E infects blackberry.
DBLINKS	KEGG BRITE: NC_015706 ICTV: 202302231

Scientific Name	Blackberry virus F [TAX:2560349]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; Badnavirus phirubi
RefSeq	NC_029303 Blackberry Virus F isolate BBV-3X, complete genome.
Evidence	Literature
Reference	PMID: 30682310
Authors	Shahid MS, Aboughanem-Sabanadzovic N, Sabanadzovic S, Tzanetakis IE
Title	Genomic Characterization and Population Structure of a Badnavirus Infecting Blackberry.
Journal	Plant Dis. 2017 Jan;101(1):110-115.
DBLINKS	KEGG BRITE: NC_029303 ICTV: 202306642 ViralZone: family, genus

Scientific Name	Blackberry virus Y [TAX:323118]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Brambyvirus
RefSeq	NC_008558 Blackberry virus Y, complete genome.
DBLINKS	KEGG BRITE: NC_008558 ICTV: 202304534 ViralZone: family, genus

Scientific Name	Emaravirus idaeobati [TAX:1980431]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Fimoviridae; Emaravirus
RefSeq	NC_029558 Raspberry leaf blotch virus segment RNA2, complete genome.
DBLINKS	KEGG BRITE: NC_029558 ICTV: 202300015 ViralZone: genus, family

Scientific Name	Raspberry latent virus [TAX:907191]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; unclassified Reovirales
RefSeq	NC_014599 Raspberry latent virus segment 2, complete sequence.
DBLINKS	KEGG BRITE: NC_014599

Scientific Name	Sowbane mosaic virus [TAX:378833]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Sobemovirus
RefSeq	NC_011187 Rubus chlorotic mottle virus, complete genome.
DBLINKS	KEGG BRITE: NC_011187 KEGG GENOME: T40294 ICTV: 202305385 ViralZone: genus, family Descriptions of Plant Viruses: 64

Scientific Name	Strawberry necrotic shock virus [TAX:243563]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Bromoviridae; Ilarvirus
RefSeq	NC_008706 Strawberry necrotic shock virus RNA 3, complete genome. NC_008707 Strawberry necrotic shock virus RNA 2, complete genome. NC_008708 Strawberry necrotic shock virus RNA 1, complete genome.
Evidence	Literature
Reference	PMID: 20195656
Authors	Tzanetakis IE, Martin RR, Scott SW
Title	Genomic sequences of blackberry chlorotic ringspot virus and strawberry necrotic shock virus and the phylogeny of viruses in subgroup 1 of the genus Ilarvirus.
Journal	Arch Virol. 2010 Apr;155(4):557-61.
DBLINKS	KEGG BRITE: NC_008706 NC_008707 NC_008708 ICTV: 202302793 Plant Viruses Online: 811

Scientific Name	Tobacco ringspot virus [TAX:12282]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus nicotianae
RefSeq	NC_005096 Tobacco ringspot virus RNA 2, complete sequence. NC_005097 Tobacco ringspot virus RNA 1, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_005096 NC_005097 KEGG GENOME: T40148 ICTV: 202302130 ViralZone: family, genus Descriptions of Plant Viruses: 309, 17

Scientific Name	Tomato black ring virus [TAX:12275]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus nigranuli
RefSeq	NC_004439 Tomato black ring virus RNA 1, complete sequence. NC_004440 Tomato black ring virus RNA 2, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_004439 NC_004440 ICTV: 202302131 ViralZone: family, genus Descriptions of Plant Viruses: 38

Scientific Name	Tomato ringspot virus [TAX:12280]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus lycopersici
RefSeq	NC_003839 Tomato ringspot virus RNA 2, complete sequence. NC_003840 Tomato ringspot virus RNA 1, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003839 NC_003840 KEGG GENOME: T40285 ICTV: 202302132 ViralZone: family, genus Descriptions of Plant Viruses: 18, 290