Capsicum

Capsicum

Scientific Name	Capsicum [TAX:4071]
Lineage	cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae

Known viruses (28)

Scientific Name	African eggplant mosaic virus [TAX:3240745]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus melongenae
RefSeq	NC_043537 African eggplant mosaic virus isolate 2013-281, complete genome.
Evidence	Literature
Reference	PMID: 33081084
Authors	Ibaba JD, Gubba A
Title	High-Throughput Sequencing Application in the Diagnosis and Discovery of Plant-Infecting Viruses in Africa, A Decade Later.
Journal	Plants (Basel). 2020 Oct 16;9(10).
DBLINKS	KEGG BRITE: NC_043537 ICTV: 202306671 ViralZone: genus, family

Scientific Name	African eggplant yellowing virus [TAX:1963256]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Polerovirus; unclassified Polerovirus
RefSeq	NC_034207 African eggplant yellowing virus isolate eMA4, complete genome.
Evidence	Literature
Reference	PMID: 28220324
Authors	Afouda L, Kone D, Zinsou V, Dossou L, Kenyon L, Winter S, Knierim D
Title	Virus surveys of Capsicum spp. in the Republic of Benin reveal the prevalence of pepper vein yellows virus and the identification of a previously uncharacterised polerovirus species.
Journal	Arch Virol. 2017 Jun;162(6):1599-1607.
DBLINKS	KEGG BRITE: NC_034207 ICTV: 202318622 ViralZone: genus, family

Scientific Name	Ageratum yellow vein virus [TAX:44560]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_027040 Ageratum yellow vein virus strain Guam 12-02 segment A, complete sequence.
Evidence	Literature
Reference	Occurrence and distribution of begomoviruses infecting tomatoes, peppers and cucurbits in Thailand, S Charoenvilaisiri, C Seepiban, N Phironrit… - Crop Protection, 2020 - Elsevier
DBLINKS	KEGG BRITE: NC_027040 ViralZone: genus, family

Scientific Name	Beet curly top virus [TAX:10840]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Curtovirus
RefSeq	NC_001412 Beet curly top virus - California [Logan], complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001412 KEGG GENOME: T40130 ICTV: 202303503 ViralZone: genus, family Descriptions of Plant Viruses: 210

Scientific Name	Bell pepper mottle virus [TAX:368735]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Tobamovirus
RefSeq	NC_009642 Bell pepper mottle tobamovirus, complete genome.
Evidence	Literature
Reference	PMID: 17334946
Authors	Rhie MJ, Min BE, Hong JS, Song YS, Ryu KH
Title	Complete genome sequence supports bell pepper mottle virus as a species of the genus Tobamovirus.
Journal	Arch Virol. 2007;152(7):1401-7.
DBLINKS	KEGG BRITE: NC_009642 ICTV: 202305421

Scientific Name	Chili leaf curl Bhatinda betasatellite [TAX:1335766]
Lineage	Viruses; Tolecusatellitidae; Betasatellite; unclassified Betasatellite
RefSeq	NC_021345 Chili leaf curl Bhatinda betasatellite isolate AnAv, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_021345

Scientific Name	Chilli leaf curl Ahmedabad virus-India [India/Ahmedabad/2014] [TAX:1678003]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; unclassified Begomovirus
RefSeq	NC_028046 Chilli leaf curl Ahmedabad virus-India [India/Ahmedabad/2014], complete genome.
DBLINKS	KEGG BRITE: NC_028046 ICTV: 202306696 ViralZone: genus, family

Scientific Name	Chilli leaf curl alphasatellite [TAX:1428342]
Lineage	Viruses; Alphasatellitidae; Geminialphasatellitinae; Colecusatellite
RefSeq	NC_039234 Chilli leaf curl alphasatellite clone VIRO 273, complete sequence.
Evidence	Literature
Reference	PMID: 28062387
Authors	Vinoth Kumar R, Singh D, Singh AK, Chakraborty S
Title	Molecular diversity, recombination and population structure of alphasatellites associated with begomovirus disease complexes.
Journal	Infect Genet Evol. 2017 Apr;49:39-47.
DBLINKS	KEGG BRITE: NC_039234 ICTV: 202305681

Scientific Name	Chilli leaf curl Gonda virus [TAX:2560380]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_055136 Chilli leaf curl Gonda virus isolate India/Gonda/chilli/2013, complete genome.
DBLINKS	KEGG BRITE: NC_055136 ICTV: 202306698 ViralZone: genus, family

Scientific Name	Chilli leaf curl India alphasatellite [TAX:1507725]
Lineage	Viruses; Alphasatellitidae; Geminialphasatellitinae; unclassified Begomovirus-associated alphasatellites
RefSeq	NC_027431 Chilli leaf curl India alphasatellite clone VIRO 391, complete sequence.
Evidence	Literature
Reference	PMID: 28062387
Authors	Vinoth Kumar R, Singh D, Singh AK, Chakraborty S
Title	Molecular diversity, recombination and population structure of alphasatellites associated with begomovirus disease complexes.
Journal	Infect Genet Evol. 2017 Apr;49:39-47.
DBLINKS	KEGG BRITE: NC_027431

Scientific Name	Chilli leaf curl India virus [TAX:577124]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_038875 Chilli leaf curl India virus segment A, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_038875 ICTV: 202303207 ViralZone: genus, family

Scientific Name	Chilli leaf curl Sri Lanka virus [TAX:2560381]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_055131 Chilli leaf curl Sri Lanka virus isolate CL-14, complete genome.
DBLINKS	KEGG BRITE: NC_055131 ICTV: 202306699 ViralZone: genus, family

Scientific Name	Chilli leaf curl virus [TAX:172278]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_004628 Chilli leaf curl virus, complete genome.
Evidence	Literature
Reference	PMID: 23911631
Authors	Khan AJ, Akhtar S, Al-Zaidi AM, Singh AK, Briddon RW
Title	Genetic diversity and distribution of a distinct strain of Chili leaf curl virus and associated betasatellite infecting tomato and pepper in Oman.
Journal	Virus Res. 2013 Oct;177(1):87-97.
DBLINKS	KEGG BRITE: NC_004628 ICTV: 202303210 ViralZone: genus, family

Scientific Name	Cotton leaf curl betasatellite [TAX:134386]
Lineage	Viruses; Tolecusatellitidae; Betasatellite
RefSeq	NC_003200 Cotton leaf curl virus-associated DNA beta, complete genome. NC_017829 Cotton leaf curl virus betasatellite, complete genome. NC_076960 Cotton leaf curl betasatellite complete sequence, isolate IS-6. NC_076961 Cotton leaf curl virus betasatellite complete sequence, isolate Kashmir 1.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_003200 NC_017829 NC_076960 NC_076961 ICTV: 202309195, 202309196

Scientific Name	Pepper enamovirus [TAX:2073163]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Enamovirus; unclassified Enamovirus
RefSeq	NC_037052 Pepper enamovirus isolate R1 ORF0, replicase polyprotein, coat protein, and ORF5 genes, complete cds.
Evidence	RefSeq
Evidence	Literature
Reference	First report of Pepper veinal mottle virus, Pepper yellows virus and a novel enamovirus in chilli pepper(Capsicum sp.) in Rwanda
DBLINKS	KEGG BRITE: NC_037052 ICTV: 202318498 ViralZone: family, genus

Scientific Name	Pepper golden mosaic virus [TAX:223301]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_004096 Pepper golden mosaic virus DNA B, complete sequence. NC_004101 Pepper golden mosaic virus DNA A, complete sequence.
Evidence	Literature
Reference	PMID: 18944336
Authors	Méndez-Lozano J, Torres-Pacheco I, Fauquet CM, Rivera-Bustamante RF
Title	Interactions Between Geminiviruses in a Naturally Occurring Mixture: Pepper huasteco virus and Pepper golden mosaic virus.
Journal	Phytopathology. 2003 Mar;93(3):270-7.
DBLINKS	KEGG BRITE: NC_004096 NC_004101 ICTV: 202303306 ViralZone: genus, family

Scientific Name	Pepper huasteco yellow vein virus [TAX:223303]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_001359 Pepper huasteco yellow vein virus segment A, complete sequence.
Evidence	Literature
Reference	PMID: 18944336
Authors	Méndez-Lozano J, Torres-Pacheco I, Fauquet CM, Rivera-Bustamante RF
Title	Interactions Between Geminiviruses in a Naturally Occurring Mixture: Pepper huasteco virus and Pepper golden mosaic virus.
Journal	Phytopathology. 2003 Mar;93(3):270-7.
Comment	pepper
DBLINKS	KEGG BRITE: NC_001359 ICTV: 202303307 ViralZone: genus, family

Scientific Name	Pepper leaf curl virus [TAX:83839]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_000882 Pepper leaf curl virus, complete genome.
DBLINKS	KEGG BRITE: NC_000882 ICTV: 202303310 ViralZone: genus, family

Scientific Name	Pepper vein yellows virus [TAX:909827]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Polerovirus
RefSeq	NC_015050 Pepper vein yellows virus genomic RNA, complete genome. NC_075416 Pepper vein yellows virus isolate HN, complete genome. NC_075422 Pepper vein yellows virus isolate 12KNX1, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_015050 NC_075416 NC_075422 ICTV: 202303785, 202306622, 202306623 ViralZone: genus, family

Scientific Name	Pepper yellow leaf curl China virus [TAX:1288829]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Malvastrum yellow vein Yunnan virus
GenBank	KC149941 Pepper yellow leaf curl China virus isolate YN57-18, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: genus, family

Scientific Name	Pepper yellow leaf curl virus [TAX:881944]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_020236 Pepper yellow leaf curl virus isolate YN65-1, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_020236 ICTV: 202303313 ViralZone: genus, family

Scientific Name	Potato virus Y [TAX:12216]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus yituberosi
RefSeq	NC_001616 Potato virus Y, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001616 KEGG GENOME: T40141 ICTV: 202304670 ViralZone: genus, family Descriptions of Plant Viruses: 414, 242, 37

Scientific Name	Potato virus Y strain C [TAX:12217]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus yituberosi; Potato virus Y
GenBank	EU563512 Potato virus Y strain C isolate PRI-509, complete genome.
Evidence	UniProt
DBLINKS	ViralZone: genus, family

Scientific Name	Potato virus Y strain O [TAX:12220]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus yituberosi; Potato virus Y
GenBank	JQ924285 Potato virus Y strain O isolate YO-ANT25, complete genome.
Evidence	UniProt
DBLINKS	ViralZone: genus, family

Scientific Name	Tobacco curly shoot virus - [SC118] [TAX:705074]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Tobacco curly shoot virus
GenBank	GU001879 Tobacco curly shoot virus - [SC118], complete genome.
Evidence	GenBank
DBLINKS	ViralZone: genus, family

Scientific Name	Tomato leaf curl Gujarat virus [TAX:219299]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_004558 Tomato leaf curl Gujarat virus - [Varanasi] segment A, complete sequence. NC_004559 Tomato leaf curl Gujarat virus - [Varanasi] segment B, complete sequence.
Evidence	Literature
Reference	PMID: 18943612
Authors	Chakraborty S, Pandey PK, Banerjee MK, Kalloo G, Fauquet CM
Title	Tomato leaf curl Gujarat virus, a New Begomovirus Species Causing a Severe Leaf Curl Disease of Tomato in Varanasi, India.
Journal	Phytopathology. 2003 Dec;93(12):1485-95.
Comment	pepper pepper
DBLINKS	KEGG BRITE: NC_004558 NC_004559 ICTV: 202303425 ViralZone: genus, family

Scientific Name	Tomato mosaic virus [TAX:12253]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Tobamovirus
RefSeq	NC_002692 Tomato mosaic virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_002692 KEGG GENOME: T40137 ICTV: 202305449 Descriptions of Plant Viruses: 156

Scientific Name	Tomato mottle Taino virus [TAX:223358]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_001828 Tomato mottle Taino virus DNA A, complete sequence. NC_001917 Tomato mottle Taino virus DNA B, complete sequence.
Evidence	Literature
Reference	Ramos, P. L., Guerra, O., Peral, R., Oramas, P., Guevara, R. G., & Rivera-Bustamante, R. (1997). Taino tomato mottle virus, a new bipartite geminivirus from Cuba. Plant Disease, 81(9), 1095-1095.
DBLINKS	KEGG BRITE: NC_001828 NC_001917 ICTV: 202303468 ViralZone: genus, family