Capsicum annuum

Capsicum annuum

Scientific Name	Capsicum annuum [TAX:4072]
Lineage	cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
DBLINKS	KEGG GENOME: T04646

Known viruses (51)

Scientific Name	Alstroemeria necrotic streak virus [TAX:693450]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus; Orthotospovirus alstroemerinecrosis
RefSeq	NC_055297 Alstroemeria necrotic streak virus isolate San_Vicente3 segment M, complete sequence. NC_055298 Alstroemeria necrotic streak virus isolate San_Vicente3 segment L, complete sequence. NC_055299 Alstroemeria necrotic streak virus isolate San_Vicente3 segment S, complete sequence.
Evidence	Literature
Reference	Genome characterization of three Alstroemeria necrotic streak orthotospovirus (ANSV) isolates naturally infecting bell pepper (Capsicum annuum) in Antioquia (Colombia), Y Gallo, A Sierra, L Muñoz, M Marín… - Tropical Plant Pathology, 2019 - Springer
DBLINKS	KEGG BRITE: NC_055297 NC_055298 NC_055299 ICTV: 202307245 ViralZone: family, genus

Scientific Name	Begomovirus-associated alphasatellite sp. [TAX:1911908]
Lineage	Viruses; Alphasatellitidae; Geminialphasatellitinae; Clecrusatellite; Capsicum India alphasatellite
RefSeq	NC_075993 Begomovirus-associated alphasatellite sp. isolate PJ alpha rep (gp1) gene, complete cds. NC_076428 Begomovirus-associated alphasatellite sp. isolate UHAsV-1.CD-W, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_075993 NC_076428 ICTV: 202307289, 202308800

Scientific Name	Bell pepper alphaendornavirus [TAX:354328]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Endornaviridae; Alphaendornavirus
RefSeq	NC_039216 Bell pepper endornavirus isolate Penol, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	Genome sequencing of two Bell pepper endornavirus (BPEV) variants infecting Capsicum annuum in Colombia, L Muñoz-Baena, M Marín-Montoya… - Agronomía …, 2017 - scielo.org.co
DBLINKS	KEGG BRITE: NC_039216 ICTV: 202303046

Scientific Name	Capsicum annuum amalgavirus 1 [TAX:2069320]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Amalgaviridae; unclassified Amalgaviridae
RefSeq	NC_040662 Capsicum annuum amalgavirus 1 strain CaAV1-CM334 genomic sequence.
DBLINKS	KEGG BRITE: NC_040662 ViralZone: family

Scientific Name	Chili leaf curl betasatellite [TAX:2010286]
Lineage	Viruses; Tolecusatellitidae; Betasatellite
RefSeq	NC_005048 Chilli leaf curl disease associated sequence virion, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 12890625
Authors	Briddon RW, Bull SE, Amin I, Idris AM, Mansoor S, Bedford ID, Dhawan P, Rishi N, Siwatch SS, Abdel-Salam AM, Brown JK, Zafar Y, Markham PG
Title	Diversity of DNA beta, a satellite molecule associated with some monopartite begomoviruses.
Journal	Virology. 2003 Jul 20;312(1):106-21.
DBLINKS	KEGG BRITE: NC_005048 ICTV: 202305129

Scientific Name	Chili leaf curl Sri Lanka betasatellite [TAX:2010315]
Lineage	Viruses; Tolecusatellitidae; Betasatellite
RefSeq	NC_038676 Chili leaf curl Sri Lanka betasatellite isolate CL-15, complete sequence.
Evidence	Literature
Reference	PMID: 23090833
Authors	Senanayake DM, Jayasinghe JE, Shilpi S, Wasala SK, Mandal B
Title	A new begomovirus-betasatellite complex is associated with chilli leaf curl disease in Sri Lanka.
Journal	Virus Genes. 2013 Feb;46(1):128-39.
DBLINKS	KEGG BRITE: NC_038676 ICTV: 202305131

Scientific Name	Chilli leaf curl virus-[Soyla:India:2009] [TAX:749223]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Chilli leaf curl virus
GenBank	HM004433 Chilli leaf curl virus-[Soyla:India:2009] coat protein-like (AV1) gene, complete sequence.
Evidence	GenBank
DBLINKS	ViralZone: genus, family

Scientific Name	Chilli veinal mottle virus [TAX:52280]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus capsivenamaculae
RefSeq	NC_005778 Chilli veinal mottle virus, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_005778 ICTV: 202304595 ViralZone: genus, family

Scientific Name	Euphorbia yellow mosaic virus [TAX:598494]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_012553 Euphorbia yellow mosaic virus DNA A, complete genome. NC_012554 Euphorbia yellow mosaic virus DNA B, complete genome.
Evidence	Literature
Reference	PMID: 21779908
Authors	Fernandes FR, Albuquerque LC, de Oliveira CL, Cruz AR, da Rocha WB, Pereira TG, Naito FY, Dias Nde M, Nagata T, Faria JC, Zerbini FM, Aragão FJ, Inoue-Nagata AK
Title	Molecular and biological characterization of a new Brazilian begomovirus, euphorbia yellow mosaic virus (EuYMV), infecting Euphorbia heterophylla plants.
Journal	Arch Virol. 2011 Nov;156(11):2063-9.
DBLINKS	KEGG BRITE: NC_012553 NC_012554 ICTV: 202303252 ViralZone: genus, family

Scientific Name	Jatropha mosaic India virus-[Lucknow] [TAX:569949]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Jatropha mosaic India virus
RefSeq	NC_038449 Jatropha mosaic India virus-[Lucknow] strain SK-2 segment DNA-A, complete sequence.
Evidence	Literature
Reference	Biological Characterization and Complete Genome Sequence of a Possible Strain of Indian cassava mosaic virus from Jatropha curcas in India, SK Snehi, A Srivastava, SK Raj - Journal of Phytopathology, 2012 - Wiley Online Library
Comment	Vector: Bemisia tabaci
DBLINKS	KEGG BRITE: NC_038449 ICTV: 202303263 ViralZone: genus, family

Scientific Name	Mediterranean ruda virus [TAX:2058620]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus rutae
RefSeq	NC_043536 Mediterranean ruda virus isolate ParP17, complete genome.
Evidence	Literature
Reference	PMID: 29184567
Authors	Rodríguez-Nevado C, Montes N, Pagán I
Title	Ecological Factors Affecting Infection Risk and Population Genetic Diversity of a Novel Potyvirus in Its Native Wild Ecosystem.
Journal	Front Plant Sci. 2017;8:1958.
DBLINKS	KEGG BRITE: NC_043536 ICTV: 202306673 ViralZone: genus, family

Scientific Name	Moroccan pepper virus [TAX:208086]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae; Tombusvirus; Tombusvirus moroccoense
RefSeq	NC_020073 Moroccan pepper virus isolate MPV-PM75, complete genome.
Evidence	Literature
Reference	PMID: 23360531
Authors	Wintermantel WM, Hladky LL
Title	Complete genome sequence and biological characterization of Moroccan pepper virus (MPV) and reclassification of Lettuce necrotic stunt virus as MPV.
Journal	Phytopathology. 2013 May;103(5):501-8.
DBLINKS	KEGG BRITE: NC_020073 ICTV: 202305259 Plant Viruses Online: 601

Scientific Name	Paprika mild mottle virus [TAX:35281]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Tobamovirus
RefSeq	NC_004106 Paprika mild mottle virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_004106 ICTV: 202305435

Scientific Name	Parietaria mottle virus [TAX:64958]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Bromoviridae; Ilarvirus
RefSeq	NC_005848 Parietaria mottle virus RNA 1, complete genome. NC_005849 Parietaria mottle virus RNA 2, complete genome.
Evidence	Literature
Reference	PMID: 16773234
Authors	Scott SW, Zimmerman MT, Rankin D
Title	Complete sequence of the RNA 1 and RNA 2 of Parietaria mottle virus.
Journal	Arch Virol. 2006 Sep;151(9):1895-8.
DBLINKS	KEGG BRITE: NC_005848 NC_005849 ICTV: 202302789

Scientific Name	Pepper blistering leaf virus [TAX:2651594]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_055596 Pepper blistering leaf virus DNA A, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_055596 ICTV: 202309129 ViralZone: genus, family

Scientific Name	Pepper chat fruit viroid [TAX:574040]
Lineage	Viruses; Pospiviroidae; Pospiviroid
RefSeq	NC_011590 Pepper chat fruit viroid, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_011590 ICTV: 202304526 ViralZone: family

Scientific Name	Pepper chlorotic spot virus [TAX:1414655]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus; Orthotospovirus capsicimaculaflavi
RefSeq	NC_033772 Pepper chlorotic spot virus isolate 14YV733 segment S, complete sequence. NC_033773 Pepper chlorotic spot virus isolate 14YV733 segment M, complete sequence. NC_033774 Pepper chlorotic spot virus isolate 14YV733 segment L, complete sequence.
Evidence	Literature
Reference	PMID: 28526964
Authors	Zheng K, Chen TC, Yeh SD, Rahman MS, Su X, Wu K, Li T, Zhang Z, Dong J
Title	Characterization of a new isolate of pepper chlorotic spot virus from Yunnan province, China.
Journal	Arch Virol. 2017 Sep;162(9):2809-2814.
DBLINKS	KEGG BRITE: NC_033772 NC_033773 NC_033774 ICTV: 202307250 ViralZone: family, genus

Scientific Name	Pepper cryptic virus 1 [TAX:369643]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Partitiviridae; Deltapartitivirus
RefSeq	NC_037095 Pepper cryptic virus 1 isolate Jal-01 segment RNA1, complete sequence. NC_037096 Pepper cryptic virus 1 isolate Jal-01 segment RNA2, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 21695493
Authors	Sabanadzovic S, Valverde RA
Title	Properties and detection of two cryptoviruses from pepper (Capsicum annuum).
Journal	Virus Genes. 2011 Oct;43(2):307-12.
DBLINKS	KEGG BRITE: NC_037095 NC_037096 ICTV: 202304179 ViralZone: family

Scientific Name	Pepper cryptic virus 2 [TAX:1050903]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Partitiviridae; Deltapartitivirus
RefSeq	NC_034159 Pepper cryptic virus 2 isolate HW-01 segment RNA1, complete sequence. NC_034167 Pepper cryptic virus 2 isolate HW-01 segment RNA2, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 21695493
Authors	Sabanadzovic S, Valverde RA
Title	Properties and detection of two cryptoviruses from pepper (Capsicum annuum).
Journal	Virus Genes. 2011 Oct;43(2):307-12.
DBLINKS	KEGG BRITE: NC_034159 NC_034167 ICTV: 202304180 ViralZone: family

Scientific Name	Pepper huasteco yellow vein virus [TAX:223303]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_001359 Pepper huasteco yellow vein virus segment A, complete sequence. NC_001369 Pepper huasteco yellow vein virus DNA B, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001359 NC_001369 ICTV: 202303307 ViralZone: genus, family

Scientific Name	Pepper leaf curl virus isolate Varanasi [TAX:436241]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Pepper leaf curl virus
GenBank	EF190217 Pepper leaf curl virus isolate Varanasi, complete genome.
Evidence	Literature
Reference	PMID: 18175042
Authors	Chattopadhyay B, Singh AK, Yadav T, Fauquet CM, Sarin NB, Chakraborty S
Title	Infectivity of the cloned components of a begomovirus: DNA beta complex causing chilli leaf curl disease in India.
Journal	Arch Virol. 2008;153(3):533-9.
DBLINKS	ViralZone: genus, family

Scientific Name	Pepper leaf curl Yunnan virus satellite DNA beta [TAX:519016]
Lineage	Viruses; Tolecusatellitidae; Betasatellite; unclassified Betasatellite
RefSeq	NC_010619 Pepper leaf curl Yunnan virus satellite DNA beta, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_010619

Scientific Name	Pepper leaf curl Yunnan virus-[YN323] [TAX:519015]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Pepper leaf curl Yunnan virus
RefSeq	NC_010618 Pepper leaf curl Yunnan virus-[YN323], complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_010618 ICTV: 202303311 ViralZone: genus, family

Scientific Name	Pepper mild mottle virus [TAX:12239]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Tobamovirus
RefSeq	NC_003630 Pepper mild mottle virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003630 KEGG GENOME: T40276 ICTV: 202305437 Descriptions of Plant Viruses: 330

Scientific Name	Pepper mottle virus [TAX:12209]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus capsimaculae
RefSeq	NC_001517 Pepper mottle virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001517 KEGG GENOME: T40323 ICTV: 202304659 ViralZone: genus, family Descriptions of Plant Viruses: 253

Scientific Name	Pepper ringspot virus [TAX:31750]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Tobravirus
RefSeq	NC_003669 Pepper ringspot virus RNA 1, complete sequence. NC_003670 Pepper ringspot virus RNA 2, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003669 NC_003670 ICTV: 202305460 Descriptions of Plant Viruses: 347

Scientific Name	Pepper severe mosaic virus [TAX:12210]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus
RefSeq	NC_008393 Pepper severe mosaic virus, complete genome.
Evidence	Literature
Reference	PMID: 16699829
Authors	Ahn HI, Yoon JY, Hong JS, Yoon HI, Kim MJ, Ha JH, Rhie MJ, Choi JK, Park WM, Ryu KH
Title	The complete genome sequence of pepper severe mosaic virus and comparison with other potyviruses.
Journal	Arch Virol. 2006 Oct;151(10):2037-45.
DBLINKS	KEGG BRITE: NC_008393 ICTV: 202304660 ViralZone: genus, family

Scientific Name	Pepper vein yellows virus [TAX:909827]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Polerovirus
RefSeq	NC_015050 Pepper vein yellows virus genomic RNA, complete genome. NC_075416 Pepper vein yellows virus isolate HN, complete genome. NC_075422 Pepper vein yellows virus isolate 12KNX1, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_015050 NC_075416 NC_075422 ICTV: 202303785, 202306622, 202306623 ViralZone: genus, family

Scientific Name	Pepper vein yellows virus 2 [TAX:2560636]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Polerovirus
RefSeq	NC_055129 Pepper vein yellows virus 2 isolate Is, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_055129 ICTV: 202306621 ViralZone: genus, family

Scientific Name	Pepper vein yellows virus 5 [TAX:1965355]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Polerovirus
RefSeq	NC_036803 Pepper vein yellows virus 5 isolate Spain-Almeria 2-2013, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_036803 ICTV: 202306624 ViralZone: genus, family

Scientific Name	Pepper veinal mottle virus [TAX:255066]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus capsivenae
RefSeq	NC_011918 Pepper veinal mottle virus, complete genome.
Evidence	Literature
Reference	PMID: 18998046
Authors	Ha JH, Hong JS, Kim TS, Ryu KH
Title	Complete genome sequence of an isolate of Pepper veinal mottle virus and phylogenetic relationship with other potyviruses.
Journal	Arch Virol. 2008;153(12):2315-8.
DBLINKS	KEGG BRITE: NC_011918 KEGG GENOME: T40324 ICTV: 202304661 ViralZone: genus, family Descriptions of Plant Viruses: 104

Scientific Name	Pepper virus A [TAX:1803898]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus; Carlavirus PepVA
RefSeq	NC_034376 Pepper virus A isolate TW RdRp (gp1), TGB1 (gp2), TGB2 (gp3), coat protein (gp4), and putative nucleic acid binding protein (gp5) genes, complete cds.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 28595635
Authors	Jo Y, Choi H, Kim SM, Kim SL, Lee BC, Cho WK
Title	The pepper virome: natural co-infection of diverse viruses and their quasispecies.
Journal	BMC Genomics. 2017 Jun 8;18(1):453.
DBLINKS	KEGG BRITE: NC_034376 ICTV: 202313846

Scientific Name	Pepper yellow leaf curl Aceh virus [TAX:2547432]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_055516 Pepper yellow leaf curl Aceh virus DNA, segment DNA-A, complete sequence, isolate: PepYLCAV-BAPep-V2. NC_055517 Pepper yellow leaf curl Aceh virus DNA, segment DNA-B, complete sequence, isolate: PepYLCAV-BAPep-V2.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_055516 NC_055517 ICTV: 202307528 ViralZone: genus, family

Scientific Name	Pepper yellow leaf curl Indonesia virus [TAX:292477]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_008283 Pepper yellow leaf curl Indonesia virus DNA-A, complete genome. NC_008284 Pepper yellow leaf curl Indonesia virus DNA-B, complete genome.
Evidence	Literature
Reference	PMID: 19015934
Authors	Sakata JJ, Shibuya Y, Sharma P, Ikegami M
Title	Strains of a new bipartite begomovirus, pepper yellow leaf curl Indonesia virus, in leaf-curl-diseased tomato and yellow-vein-diseased ageratum in Indonesia.
Journal	Arch Virol. 2008;153(12):2307-13.
DBLINKS	KEGG BRITE: NC_008283 NC_008284 ICTV: 202303312 ViralZone: genus, family

Scientific Name	Pepper yellow leaf curl virus PSSWS-14 [TAX:1828512]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Pepper yellow leaf curl Indonesia virus 2
RefSeq	NC_055146 Pepper yellow leaf curl virus PSSWS-14 segment DNA-A, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_055146 ICTV: 202306706 ViralZone: genus, family

Scientific Name	Pepper yellow mosaic virus [TAX:160358]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus capsiflavi
RefSeq	NC_014327 Pepper yellow mosaic virus RNA, complete genome, strain: DF.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_014327 ICTV: 202304662 ViralZone: genus, family

Scientific Name	Pepper yellow vein Mali virus [TAX:260378]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_005347 Pepper yellow vein Mali virus, complete genome.
Evidence	Literature
Reference	PMID: 18278427
Authors	Zhou YC, Noussourou M, Kon T, Rojas MR, Jiang H, Chen LF, Gamby K, Foster R, Gilbertson RL
Title	Evidence of local evolution of tomato-infecting begomovirus species in West Africa: characterization of tomato leaf curl Mali virus and tomato yellow leaf crumple virus from Mali.
Journal	Arch Virol. 2008;153(4):693-706.
Comment	Capsicum annuum cv. Cayenne Long
DBLINKS	KEGG BRITE: NC_005347 ICTV: 202303314 ViralZone: genus, family

Scientific Name	Pepper yellows virus [TAX:698400]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Polerovirus; unclassified Polerovirus
RefSeq	NC_077216 Pepper yellows virus genome assembly, complete genome: monopartite.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_077216 ICTV: 202306625 ViralZone: genus, family

Scientific Name	Potato virus V [TAX:40640]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus vetuberosi
RefSeq	NC_004010 Potato virus V, complete genome.
Evidence	Literature
Reference	PMID: 18944596
Authors	Oruetxebarria I, Kekarainen T, Spetz C, Valkonen JP
Title	Molecular Characterization of Potato virus V Genomes from Europe Indicates Limited Spatiotemporal Strain Differentiation.
Journal	Phytopathology. 2000 Apr;90(4):437-44.
Comment	Pepper (C. annuum cv. RNaky)
DBLINKS	KEGG BRITE: NC_004010 ICTV: 202304669 ViralZone: genus, family Descriptions of Plant Viruses: 316

Scientific Name	Tobacco etch virus [TAX:12227]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus nicotianainsculpentis
RefSeq	NC_001555 Tobacco etch virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001555 KEGG GENOME: T40135 ICTV: 202304695 ViralZone: genus, family Descriptions of Plant Viruses: 55, 258

Scientific Name	Tobacco mild green mosaic virus [TAX:12241]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Tobamovirus
RefSeq	NC_001556 Tobacco mild green mosaic virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001556 ICTV: 202305446 Descriptions of Plant Viruses: 351

Scientific Name	Tobacco rattle virus [TAX:12295]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Tobravirus
RefSeq	NC_003805 Tobacco rattle virus RNA 1, complete sequence. NC_003811 Tobacco rattle virus RNA 2, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003805 NC_003811 KEGG GENOME: T40147 ICTV: 202305461 Descriptions of Plant Viruses: 346, 12, 398

Scientific Name	Tobacco ringspot virus [TAX:12282]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus nicotianae
RefSeq	NC_005096 Tobacco ringspot virus RNA 2, complete sequence. NC_005097 Tobacco ringspot virus RNA 1, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_005096 NC_005097 KEGG GENOME: T40148 ICTV: 202302130 ViralZone: family, genus Descriptions of Plant Viruses: 309, 17

Scientific Name	Tobacco yellow crinkle virus [TAX:565052]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_015627 Tobacco yellow crinkle virus DNA A, complete genome. NC_015628 Tobacco yellow crinkle virus DNA B, complete genome.
Evidence	Literature
Reference	IDENTIFICACIÓN DE NUEVOS BEGOMOVIRUS EN CUBA MEDIANTE EL EMPLEO DE LA AMPLIFICACIÓN POR CÍRCULO RODANTE
DBLINKS	KEGG BRITE: NC_015627 NC_015628 ICTV: 202303400 ViralZone: genus, family

Scientific Name	Tomato bushy stunt virus [TAX:12145]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae; Tombusvirus; Tombusvirus lycopersici
RefSeq	NC_001554 Tomato bushy stunt virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001554 KEGG GENOME: T40136 ICTV: 202305265 Descriptions of Plant Viruses: 69, 382

Scientific Name	Tomato chlorotic spot virus [TAX:12851]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus; Orthotospovirus tomatoflavi
RefSeq	NC_035482 Tomato chlorotic spot virus isolate DR segment M, complete sequence. NC_035483 Tomato chlorotic spot virus isolate DR segment L, complete sequence. NC_035484 Tomato chlorotic spot virus isolate DR segment S, complete sequence.
Evidence	Literature
Reference	PMID: 29373979
Authors	Martínez RT, de Almeida MMS, Rodriguez R, de Oliveira AS, Melo FL, Resende RO
Title	Identification and genome analysis of tomato chlorotic spot virus and dsRNA viruses from coinfected vegetables in the Dominican Republic by high-throughput sequencing.
Journal	Virol J. 2018 Jan 26;15(1):24.
DBLINKS	KEGG BRITE: NC_035482 NC_035483 NC_035484 ViralZone: family, genus

Scientific Name	Tomato leaf curl Joydebpur virus [TAX:309390]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_007723 Tomato leaf curl Joydebpur virus DNA-A, complete genome. NC_074895 Tomato leaf curl Joydebpur virus isolate Varanasi genomic sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_007723 NC_074895 ICTV: 202303210, 202303431 ViralZone: genus, family

Scientific Name	Tomato yellow leaf curl Oman betasatellite [TAX:1172353]
Lineage	Viruses; Tolecusatellitidae; Betasatellite; unclassified Betasatellite; Tomato yellow leaf curl betasatellite
GenBank	HE800541 Tomato yellow leaf curl virus associated betasatellite beta C1 gene, isolate P-23.
Evidence	GenBank

Scientific Name	Tomato yellow leaf curl Sardinia virus [TAX:123735]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_003828 Tomato yellow leaf curl Sardinia virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003828 ICTV: 202303481 ViralZone: genus, family

Scientific Name	Tomato yellow leaf curl virus [TAX:10832]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_004005 Tomato yellow leaf curl virus, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 18943307
Authors	Morilla G, Janssen D, García-Andrés S, Moriones E, Cuadrado IM, Bejarano ER
Title	Pepper (Capsicum annuum) Is a Dead-End Host for Tomato yellow leaf curl virus.
Journal	Phytopathology. 2005 Sep;95(9):1089-97.
DBLINKS	KEGG BRITE: NC_004005 KEGG GENOME: T40140 ICTV: 202303484 ViralZone: genus, family

Scientific Name	Turnip yellows virus [TAX:131083]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Polerovirus
RefSeq	NC_003743 Turnip yellows virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003743 ICTV: 202303790 ViralZone: genus, family