Prunus avium

Prunus avium

Scientific Name	Prunus avium [TAX:42229]
Lineage	cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
DBLINKS	KEGG GENOME: T05161

Known viruses (21)

Scientific Name	Cherry chlorotic rusty spot associated small satellite-like dsRNA A [TAX:453139]
Lineage	Viruses; unclassified viruses; unclassified satellites; RNA satellites; Double stranded RNA satellites; unclassified Double-stranded satellite RNAs; Amasya cherry disease-associated virus satellite RNAs
GenBank	AM749118 Cherry chlorotic rusty spot associated small satellite-like dsRNA A complete genome, genomic RNA.
Evidence	Literature
Reference	PMID: 15483256
Authors	Covelli L, Coutts RH, Di Serio F, Citir A, Açikgöz S, Hernández C, Ragozzino A, Flores R
Title	Cherry chlorotic rusty spot and Amasya cherry diseases are associated with a complex pattern of mycoviral-like double-stranded RNAs. I. Characterization of a new species in the genus Chrysovirus.
Journal	J Gen Virol. 2004 Nov;85(Pt 11):3389-97.
Evidence	Literature
Reference	PMID: 18283410
Authors	Covelli L, Kozlakidis Z, Di Serio F, Citir A, Açikgöz S, Hernández C, Ragozzino A, Coutts RH, Flores R
Title	Sequences of the smallest double-stranded RNAs associated with cherry chlorotic rusty spot and Amasya cherry diseases.
Journal	Arch Virol. 2008;153(4):759-62.

Scientific Name	Cherry chlorotic rusty spot associated small satellite-like dsRNA B [TAX:453140]
Lineage	Viruses; unclassified viruses; unclassified satellites; RNA satellites; Double stranded RNA satellites; unclassified Double-stranded satellite RNAs; Amasya cherry disease-associated virus satellite RNAs
GenBank	AM749119 Cherry chlorotic rusty spot associated small satellite-like dsRNA B putative chrysovirus satellite RNA, complete genome, genomic RNA.
Evidence	Literature
Reference	PMID: 15483256
Authors	Covelli L, Coutts RH, Di Serio F, Citir A, Açikgöz S, Hernández C, Ragozzino A, Flores R
Title	Cherry chlorotic rusty spot and Amasya cherry diseases are associated with a complex pattern of mycoviral-like double-stranded RNAs. I. Characterization of a new species in the genus Chrysovirus.
Journal	J Gen Virol. 2004 Nov;85(Pt 11):3389-97.
Evidence	Literature
Reference	PMID: 18283410
Authors	Covelli L, Kozlakidis Z, Di Serio F, Citir A, Açikgöz S, Hernández C, Ragozzino A, Coutts RH, Flores R
Title	Sequences of the smallest double-stranded RNAs associated with cherry chlorotic rusty spot and Amasya cherry diseases.
Journal	Arch Virol. 2008;153(4):759-62.

Scientific Name	Cherry chlorotic rusty spot associated small satellite-like dsRNA C [TAX:453141]
Lineage	Viruses; unclassified viruses; unclassified satellites; RNA satellites; Double stranded RNA satellites; unclassified Double-stranded satellite RNAs; Amasya cherry disease-associated virus satellite RNAs
GenBank	AM749120 Cherry chlorotic rusty spot associated small satellite-like dsRNA C complete genome, genomic RNA.
Evidence	Literature
Reference	PMID: 15483256
Authors	Covelli L, Coutts RH, Di Serio F, Citir A, Açikgöz S, Hernández C, Ragozzino A, Flores R
Title	Cherry chlorotic rusty spot and Amasya cherry diseases are associated with a complex pattern of mycoviral-like double-stranded RNAs. I. Characterization of a new species in the genus Chrysovirus.
Journal	J Gen Virol. 2004 Nov;85(Pt 11):3389-97.
Evidence	Literature
Reference	PMID: 18283410
Authors	Covelli L, Kozlakidis Z, Di Serio F, Citir A, Açikgöz S, Hernández C, Ragozzino A, Coutts RH, Flores R
Title	Sequences of the smallest double-stranded RNAs associated with cherry chlorotic rusty spot and Amasya cherry diseases.
Journal	Arch Virol. 2008;153(4):759-62.

Scientific Name	Cherry green ring mottle virus [TAX:65467]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Robigovirus; Robigovirus viridiavii
RefSeq	NC_001946 Sour cherry green ring mottle virus, complete genome.
Evidence	Literature
Reference	PMID: 25506311
Authors	Lee SY, Yea MC, Back CG, Choi KS, Kang IK, Lee SH, Jung HY
Title	Survey of Cherry necrotic rusty mottle virus and Cherry green ring mottle virus incidence in Korea by Duplex RT-PCR.
Journal	Plant Pathol J. 2014 Dec;30(4):445-9.
DBLINKS	KEGG BRITE: NC_001946 ICTV: 202302291 ViralZone: family, genus

Scientific Name	Cherry leaf scorch small circular viroid-like RNA 1 [TAX:1423421]
Lineage	Viruses; Riboviria; unclassified viroids
RefSeq	NC_022893 Cherry leaf scorch small circular viroid-like RNA 1 isolate es.10, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_022893

Scientific Name	Cherry mottle leaf virus [TAX:131226]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus; Trichovirus maculavii
RefSeq	NC_002500 Cherry mottle leaf virus, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_002500 KEGG GENOME: T40237 ICTV: 202302321 ViralZone: family, genus

Scientific Name	Cherry necrotic rusty mottle virus [TAX:129143]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Robigovirus; Robigovirus necroavii
RefSeq	NC_002468 Cherry necrotic rusty mottle virus, complete genome.
Evidence	Literature
Reference	PMID: 25506311
Authors	Lee SY, Yea MC, Back CG, Choi KS, Kang IK, Lee SH, Jung HY
Title	Survey of Cherry necrotic rusty mottle virus and Cherry green ring mottle virus incidence in Korea by Duplex RT-PCR.
Journal	Plant Pathol J. 2014 Dec;30(4):445-9.
DBLINKS	KEGG BRITE: NC_002468 ICTV: 202302292 ViralZone: family, genus

Scientific Name	Cherry rusty mottle associated virus [TAX:1312929]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Robigovirus; Robigovirus robigomaculae
RefSeq	NC_020996 Cherry rusty mottle associated virus isolate 95CI192R3, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_020996 ICTV: 202302293 ViralZone: family, genus

Scientific Name	Cherry small circular viroid-like RNA 1 [TAX:368620]
Lineage	Viruses; Riboviria; unclassified viroids; Cherry small circular viroid-like RNA
RefSeq	NC_028271 Cherry small circular viroid-like RNA 1 isolate cscRNA1.84, complete genome.
Evidence	Literature
Reference	PMID: 16514498
Authors	Di Serio F, Daròs JA, Ragozzino A, Flores R
Title	Close structural relationship between two hammerhead viroid-like RNAs associated with cherry chlorotic rusty spot disease.
Journal	Arch Virol. 2006 Aug;151(8):1539-49.
Comment	Isolation host: Prunus avium L. cv. Imperiale
DBLINKS	KEGG BRITE: NC_028271

Scientific Name	Cherry small circular viroid-like RNA 2 [TAX:368621]
Lineage	Viruses; Riboviria; unclassified viroids; Cherry small circular viroid-like RNA
GenBank	DQ357622 Cherry small circular viroid-like RNA 2 isolate cscRNA2.82, complete genome.
Evidence	Literature
Reference	PMID: 16514498
Authors	Di Serio F, Daròs JA, Ragozzino A, Flores R
Title	Close structural relationship between two hammerhead viroid-like RNAs associated with cherry chlorotic rusty spot disease.
Journal	Arch Virol. 2006 Aug;151(8):1539-49.

Scientific Name	Cherry symptomless virus [TAX:2705123]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus; unclassified Trichovirus
RefSeq	NC_076710 Cherry symptomless virus, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076710 ICTV: 202313857 ViralZone: family, genus

Scientific Name	Cherry twisted leaf associated virus [TAX:1424279]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Robigovirus; Robigovirus tortifoliae
RefSeq	NC_024449 Cherry twisted leaf associated virus isolate CTLV_8431, complete genome.
Evidence	Literature
Reference	PMID: 24737006
Authors	James D, Varga A, Lye D
Title	Analysis of the complete genome of a virus associated with twisted leaf disease of cherry reveals evidence of a close relationship to unassigned viruses in the family Betaflexiviridae.
Journal	Arch Virol. 2014 Sep;159(9):2463-8.
DBLINKS	KEGG BRITE: NC_024449 ICTV: 202302294 ViralZone: family, genus

Scientific Name	Cherry virus A [TAX:42882]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Trivirinae; Capillovirus; Capillovirus alphavii
RefSeq	NC_003689 Cherry virus A, complete genome.
Evidence	Literature
Reference	PMID: 7636482
Authors	Jelkmann W
Title	Cherry virus A: cDNA cloning of dsRNA, nucleotide sequence analysis and serology reveal a new plant capillovirus in sweet cherry.
Journal	J Gen Virol. 1995 Aug;76 ( Pt 8):2015-24.
DBLINKS	KEGG BRITE: NC_003689 ICTV: 202302302 ViralZone: family, genus

Scientific Name	Cherry virus B [TAX:2108357]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Foveavirus; Foveavirus betavii; Foveavirus ChVB
RefSeq	NC_076603 Cherry virus B S3 genomic RNA, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	Simultaneous infection of sweet cherry with eight virus species including a new foveavirus
DBLINKS	KEGG BRITE: NC_076603 ICTV: 202313850 ViralZone: family, genus

Scientific Name	Cherry virus Trakiya [TAX:2074132]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; unclassified Picornavirales
RefSeq	NC_040561 Cherry virus Trakiya isolate PAI 2-29, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_040561

Scientific Name	Cherry-associated luteovirus [TAX:1912598]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; unclassified Tolucaviricetes; Tolivirales; Tombusviridae; Regressovirinae; Luteovirus; Luteovirus avii
RefSeq	NC_031800 Cherry associated luteovirus, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_031800 ICTV: 202306618 ViralZone: family, genus

Scientific Name	Little cherry virus 1 [TAX:217686]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Velarivirus; Velarivirus nanoavii
RefSeq	NC_001836 Little cherry virus 1, complete genome.
Evidence	Literature
Reference	PMID: 8856025
Authors	Keim-Konrad R, Jelkmann W
Title	Genome analysis of the 3'-terminal part of the little cherry disease associated dsRNA reveals a monopartite clostero-like virus.
Journal	Arch Virol. 1996;141(8):1437-51.
Evidence	Literature
Reference	PMID: 9267008
Authors	Jelkmann W, Fechtner B, Agranovsky AA
Title	Complete genome structure and phylogenetic analysis of little cherry virus, a mealybug-transmissible closterovirus.
Journal	J Gen Virol. 1997 Aug;78 ( Pt 8):2067-71.
DBLINKS	KEGG BRITE: NC_001836 ICTV: 202303033 ViralZone: genus, family

Scientific Name	Little cherry virus 2 [TAX:154339]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Ampelovirus; Ampelovirus nanoavii
RefSeq	NC_005065 Little cherry virus 2, complete genome.
Evidence	Literature
Reference	PMID: 15449137
Authors	Rott ME, Jelkmann W
Title	Little cherry virus-2: sequence and genomic organization of an unusual member of the Closteroviridae.
Journal	Arch Virol. 2005 Jan;150(1):107-23.
Evidence	Literature
Reference	PMID: 18943345
Authors	Rott ME, Jelkmann W
Title	Detection and Partial Characterization of a Second Closterovirus Associated with Little Cherry Disease, Little cherry virus-2.
Journal	Phytopathology. 2001 Mar;91(3):261-7.
DBLINKS	KEGG BRITE: NC_005065 ICTV: 202302985 ViralZone: genus, family

Scientific Name	Prune dwarf virus [TAX:33760]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Bromoviridae; Ilarvirus; Ilarvirus PDV
RefSeq	NC_008037 Prune dwarf virus RNA 2, complete sequence. NC_008038 Prune dwarf virus, complete genome. NC_008039 Prune dwarf virus RNA 1, complete sequence.
Evidence	Literature
Reference	Reference: Setting confidence limits for the detection of prune dwarf virus in Prunus avium with a monoclonal antibody-based triple antibody-sandwich ELISA Setting confidence limits for the detection of prune dwarf virus in Prunus avium with a monoclonal antibody-based triple antibody-sandwich ELISA
Evidence	Literature
Reference	PMID: 9672650
Authors	Rampitsch C, Eastwell KC
Title	The complete nucleotide sequence of prune dwarf ilarvirus RNA-1.
Journal	Arch Virol. 1997;142(9):1911-8.
	Setting confidence limits for the detection of prune dwarf virus in Prunus avium with a monoclonal antibody-based triple antibody-sandwich ELISA
DBLINKS	KEGG BRITE: NC_008037 NC_008038 NC_008039 KEGG GENOME: T40226 ICTV: 202302790 ViralZone: family, genus Descriptions of Plant Viruses: 19

Scientific Name	Prunus virus F [TAX:1855510]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Comovirinae; Fabavirus; Fabavirus pruni
RefSeq	NC_039077 Prunus virus F isolate 8816-v1 segment RNA1 polyprotein 1 gene, complete cds. NC_039078 Prunus virus F isolate 8816-s1 segment RNA2 polyprotein 2 gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_039077 NC_039078 ICTV: 202305627 ViralZone: family, genus

Scientific Name	Tobacco ringspot virus [TAX:12282]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus nicotianae
RefSeq	NC_005096 Tobacco ringspot virus RNA 2, complete sequence. NC_005097 Tobacco ringspot virus RNA 1, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_005096 NC_005097 KEGG GENOME: T40148 ICTV: 202302130 ViralZone: genus, family Descriptions of Plant Viruses: 309, 17