Hordeum vulgare

Hordeum vulgare

Scientific Name	Hordeum vulgare [TAX:4513]
Lineage	cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Known viruses (25)

Scientific Name	Arabis mosaic virus [TAX:12271]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus arabis
RefSeq	NC_006056 Arabis mosaic virus RNA 2, complete sequence. NC_006057 Arabis mosaic virus RNA 1, complete sequence.
Evidence	Literature
Reference	Hordeum vulgare (Barley) KS Sastry, B Mandal, J Hammond, SW Scott… - Encyclopedia of Plant …, 2019 - Springer https://doi.org/10.1007/978-81-322-3912-3_464 2. Hordeum vulgare (Barley) KS Sastry, B Mandal, J Hammond, SW Scott… - Encyclopedia of Plant …, 2019 - Springer https://doi.org/10.1007/978-81-322-3912-3_464
DBLINKS	KEGG BRITE: NC_006056 NC_006057 KEGG GENOME: T40289 ICTV: 202302097 ViralZone: family, genus Plant Viruses Online: 312 Descriptions of Plant Viruses: 16

Scientific Name	Arabis mosaic virus small satellite RNA barley/CHE/1991 [TAX:857288]
Lineage	Viruses; unclassified Satellites; RNA satellites; Single stranded RNA satellites; Circular single stranded RNA satellites
RefSeq	NC_018451 Arabis mosaic virus small satellite RNA barley/CHE/1991 RNA3-VI, complete genome.
Evidence	Literature
Reference	Comparisons of genomic and pathological features among barley and grapevine infecting-isolates of Arabis mosaic virus, A Marmonier, E Vigne, V Komar, G Demangeat.., et de type viral de la, 2009 - hal.inrae.fr
Comment	Vector: Xiphinema diversicaudatum
DBLINKS	KEGG BRITE: NC_018451

Scientific Name	Bamboo mosaic virus [TAX:35286]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus; Potexvirus bambusae
RefSeq	NC_001642 Bamboo mosaic virus, complete genome.
Evidence	Literature
Reference	PMID: 8077956
Authors	Lin NS, Lin BY, Lo NW, Hu CC, Chow TY, Hsu YH
Title	Nucleotide sequence of the genomic RNA of bamboo mosaic potexvirus.
Journal	J Gen Virol. 1994 Sep;75 ( Pt 9):2513-8.
Comment	Hordeum vulgare L. cv. 'Larker'
DBLINKS	KEGG BRITE: NC_001642 ICTV: 202302197 ViralZone: genus, family

Scientific Name	Barley mild mosaic virus [TAX:12466]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Bymovirus
RefSeq	NC_003482 Barley mild mosaic virus RNA2, complete sequence. NC_003483 Barley mild mosaic virus RNA 1, complete sequence.
Evidence	RefSeq
Evidence	UniProt
Evidence	Literature
Reference	PMID: 8725111
Authors	Peerenboom E, Jacobi V, Antoniw JF, Schlichter U, Cartwright EJ, Steinbiss HH, Adams MJ
Title	The complete nucleotide sequence of RNA-2 of a fungally-transmitted UK isolate of barley mild mosaic bymovirus and identification of amino acid combinations possibly involved in fungus transmission.
Journal	Virus Res. 1996 Feb;40(2):149-59.
Evidence	Literature
Reference	PMID: 9282782
Authors	Peerenboom E, Cartwright EJ, Foulds I, Adams MJ, Stratford R, Rosner A, Steinbiss HH, Antoniw JF
Title	Complete RNA1 sequences of two UK isolates of barley mild mosaic virus: a wild-type fungus-transmissible isolate and a non-fungus-transmissible derivative.
Journal	Virus Res. 1997 Aug;50(2):175-83.
DBLINKS	KEGG BRITE: NC_003482 NC_003483 KEGG GENOME: T40300 ICTV: 202304536 ViralZone: genus, family Descriptions of Plant Viruses: 356

Scientific Name	Barley stripe mosaic virus [TAX:12327]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Hordeivirus
RefSeq	NC_003469 Barley stripe mosaic virus RNA 1, complete sequence. NC_003478 Barley stripe mosaic virus RNA 3, complete sequence. NC_003481 Barley stripe mosaic virus RNA 2, complete sequence.
Evidence	UniProt
Evidence	Literature
Reference	PMID: 2728343
Authors	Gustafson G, Armour SL, Gamboa GC, Burgett SG, Shepherd JW
Title	Nucleotide sequence of barley stripe mosaic virus RNA alpha: RNA alpha encodes a single polypeptide with homology to corresponding proteins from other viruses.
Journal	Virology. 1989 Jun;170(2):370-7.
Evidence	Literature
Reference	PMID: 25955840
Authors	Jiao J, Wang Y, Selvaraj JN, Xing F, Liu Y
Title	Barley Stripe Mosaic Virus (BSMV) Induced MicroRNA Silencing in Common Wheat (Triticum aestivum L.).
Journal	PLoS One. 2015;10(5):e0126621.
DBLINKS	KEGG BRITE: NC_003469 NC_003478 NC_003481 KEGG GENOME: T40168 ICTV: 202305408 ViralZone: family, genus Descriptions of Plant Viruses: 344, 68

Scientific Name	Barley virus G [TAX:1825924]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Polerovirus; unclassified Polerovirus
RefSeq	NC_029906 Barley virus G isolate Gimje, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 27146139
Authors	Zhao F, Lim S, Yoo RH, Igori D, Kim SM, Kwak do Y, Kim SL, Lee BC, Moon JS
Title	The complete genomic sequence of a tentative new polerovirus identified in barley in South Korea.
Journal	Arch Virol. 2016 Jul;161(7):2047-50.
DBLINKS	KEGG BRITE: NC_029906 ICTV: 202318626 ViralZone: family, genus

Scientific Name	Barley yellow dwarf virus MAV [TAX:2169984]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Regressovirinae; Luteovirus; Luteovirus mavhordei
RefSeq	NC_003680 Barley yellow dwarf virus - MAV, complete genome.
Evidence	UniProt
Evidence	Literature
Reference	Doi: 10.1111/j.1365-3059.2012.02644.x
DBLINKS	KEGG BRITE: NC_003680 ICTV: 202303767 ViralZone: family, genus

Scientific Name	Barley yellow dwarf virus-PAS [TAX:2169985]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Regressovirinae; Luteovirus; Luteovirus pashordei
RefSeq	NC_002160 Barley yellow dwarf virus-PAS, complete genome.
Evidence	Literature
Reference	A comparative study of the Barley yellow dwarf virus species PAV and PAS: distribution, accumulation and host resistance, J Jarošová, J Chrpová, V Šíp, JK Kundu - Plant Pathology, 2013 - Wiley Online Library
Comment	Vector: Rhopalosiphum padiaphids
DBLINKS	KEGG BRITE: NC_002160 ICTV: 202303768 ViralZone: family, genus

Scientific Name	Barley yellow dwarf virus-PAV [TAX:2169986]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Regressovirinae; Luteovirus; Luteovirus pavhordei
RefSeq	NC_004750 Barley yellow dwarf virus - PAV, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_004750 ICTV: 202303769 ViralZone: family, genus

Scientific Name	Barley yellow mosaic virus [TAX:12465]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Bymovirus
RefSeq	NC_002990 Barley yellow mosaic virus RNA 1, complete sequence. NC_002991 Barley yellow mosaic virus RNA 2, complete sequence.
Evidence	RefSeq
Evidence	UniProt
Evidence	Literature
Reference	PMID: 10500279
Authors	Chen J, Shi N, Cheng Y, Diao A, Wilson TM, Antoniw JF, Adams MJ
Title	Molecular analysis of barley yellow mosaic virus isolates from China.
Journal	Virus Res. 1999 Oct;64(1):13-21.
DBLINKS	KEGG BRITE: NC_002990 NC_002991 KEGG GENOME: T40301 ICTV: 202304537 ViralZone: genus, family Descriptions of Plant Viruses: 374, 143

Scientific Name	Cereal yellow dwarf virus RPV [TAX:2170100]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Polerovirus
RefSeq	NC_004751 Cereal yellow dwarf virus-RPV, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_004751 ICTV: 202303779 ViralZone: family, genus

Scientific Name	Chloris striate mosaic virus [TAX:10820]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Mastrevirus
RefSeq	NC_001466 Chloris striate mosaic virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001466 KEGG GENOME: T40171 ICTV: 202303518 ViralZone: family, genus Descriptions of Plant Viruses: 221

Scientific Name	Cytorhabdovirus gramineae [TAX:1985704]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Cytorhabdovirus
RefSeq	NC_002251 Northern cereal mosaic virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_002251 KEGG GENOME: T40174 ICTV: 202301674 ViralZone: genus, family Plant Viruses Online: 194

Scientific Name	Flock House virus [TAX:12287]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Magsaviricetes; Nodamuvirales; Nodaviridae; Alphanodavirus
RefSeq	NC_004144 Flock house virus, complete genome. NC_004146 Flock house virus RNA 1, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_004144 NC_004146 ICTV: 202303928 ViralZone: family, genus

Scientific Name	Hordeum mosaic virus [TAX:41764]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Rymovirus
RefSeq	NC_005904 Hordeum mosaic virus, complete genome.
Evidence	Literature
Reference	PMID: 15449142
Authors	French R, Stenger DC
Title	Genome sequences of Agropyron mosaic virus and Hordeum mosaic virus support reciprocal monophyly of the genera Potyvirus and Rymovirus in the family Potyviridae.
Journal	Arch Virol. 2005 Feb;150(2):299-312.
Comment	barley
DBLINKS	KEGG BRITE: NC_005904 KEGG GENOME: T40302 ICTV: 202304725 ViralZone: genus, family

Scientific Name	Hordeum vulgare alphaendornavirus [TAX:1774276]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Endornaviridae; Alphaendornavirus
RefSeq	NC_028949 Hordeum vulgare endornavirus, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_028949 ICTV: 202303051 ViralZone: family, genus

Scientific Name	Maize rough dwarf virus [TAX:10989]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Spinareoviridae; Fijivirus
RefSeq	NC_028465 Maize rough dwarf fijivirus minor structural protein (P5-1) and nonstructural protein (P5-2) genes, complete cds. NC_037570 Maize rough dwarf fijivirus RNA dependent RNA polymerase (P1) gene, complete cds. NC_037571 Maize rough dwarf fijivirus structural protein (P3) gene, complete cds. NC_037572 Maize rough dwarf fijivirus structural protein (P4) gene, complete cds. NC_037573 Maize rough dwarf fijivirus nonstructural protein (P6) gene, complete cds. NC_037574 Maize rough dwarf fijivirus nonstructural protein (P7-1) and nonstructural protein (P7-2) genes, complete cds. NC_037575 Maize rough dwarf fijivirus minor core structural protein (P8) gene, complete cds. NC_037576 Maize rough dwarf fijivirus nonstructural protein (P9-1) and nonstructural protein (P9-2) genes, complete cds. NC_037577 Maize rough dwarf fijivirus major outer structural protein (P10) gene, complete cds. NC_037578 Maize rough dwarf fijivirus structural protein (P2) gene, complete cds. NC_077721 Maize rough dwarf virus nonstructural protein P7-1 (QK487_s7gp1) and nonstructural protein P7-2 (QK487_s7gp2) genes, complete cds. NC_077722 Maize rough dwarf virus nonstructural protein P9-1 (QK487_s9gp1) and nonstructural protein P9-2 (QK487_s9gp2) genes, complete cds. NC_077723 Maize rough dwarf virus minor core structural protein P8 (QK487_s8gp1) gene, complete cds. NC_077724 Maize rough dwarf virus major outer structural protein P10 (QK487_s10gp1) gene, complete cds. NC_077725 Maize rough dwarf virus minor structural protein P5-1 (QK487_s5gp1) and minor structural protein P5-2 (QK487_s5gp2) genes, complete cds. NC_077726 Maize rough dwarf virus putative RNA dependent RNA polymerase (QK487_s1gp1) gene, complete cds. NC_077727 Maize rough dwarf virus structural protein P3 (QK487_s3gp1) gene, complete cds. NC_077728 Maize rough dwarf virus structural protein P4 (QK487_s4gp1) gene, complete cds. NC_077729 Maize rough dwarf virus structural protein P2 (QK487_s2gp1) gene, complete cds. NC_077730 Maize rough dwarf virus nonstructural protein P6 (QK487_s6gp1) gene, complete cds.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_028465 NC_037570 NC_037571 NC_037572 NC_037573 NC_037574 NC_037575 NC_037576 NC_037577 NC_037578 NC_077721 NC_077722 NC_077723 NC_077724 NC_077725 NC_077726 NC_077727 NC_077728 NC_077729 NC_077730 ICTV: 202304952 ViralZone: genus, family Descriptions of Plant Viruses: 72

Scientific Name	Maize streak virus - E[Pat] [TAX:268331]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Mastrevirus; Maize streak virus
GenBank	AF329888 Maize streak virus - E[Pat] isolate MSV-Pat, complete genome.
Evidence	UniProt
DBLINKS	ViralZone: family, genus

Scientific Name	Oat blue dwarf virus [TAX:56879]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Tymoviridae; Marafivirus; Marafivirus avenae
RefSeq	NC_001793 Oat blue dwarf virus complete genome.
Evidence	Literature
Reference	PMID: 9185605
Authors	Edwards MC, Zhang Z, Weiland JJ
Title	Oat blue dwarf marafivirus resembles the tymoviruses in sequence, genome organization, and expression strategy.
Journal	Virology. 1997 May 26;232(1):217-29.
Comment	Hordeum vulgare
DBLINKS	KEGG BRITE: NC_001793 KEGG GENOME: T40242 ICTV: 202302352 ViralZone: genus, family Descriptions of Plant Viruses: 123

Scientific Name	Rice black streaked dwarf virus [TAX:10990]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Spinareoviridae; Fijivirus
RefSeq	NC_003728 Rice black streaked dwarf virus segment 3, complete sequence. NC_003729 Rice black streaked dwarf virus segment 1, complete sequence. NC_003730 Rice black streaked dwarf virus segment 7, complete sequence. NC_003731 Rice black streaked dwarf virus segment 9, complete sequence. NC_003732 Rice black streaked dwarf virus segment 8, complete sequence. NC_003733 Rice black streaked dwarf virus segment 10, complete sequence. NC_003734 Rice black streaked dwarf virus segment 2, complete sequence. NC_003735 Rice black streaked dwarf virus segment 4, complete sequence. NC_003736 Rice black streaked dwarf virus segment 5, complete sequence. NC_003737 Rice black streaked dwarf virus segment 6, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003728 NC_003729 NC_003730 NC_003731 NC_003732 NC_003733 NC_003734 NC_003735 NC_003736 NC_003737 KEGG GENOME: T40175 ICTV: 202304957 ViralZone: genus, family Descriptions of Plant Viruses: 135

Scientific Name	Soil-borne wheat mosaic virus [TAX:28375]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Furovirus
RefSeq	NC_002041 Soil-borne wheat mosaic virus RNA1, complete sequence. NC_002042 Soil-borne wheat mosaic virus RNA2, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_002041 NC_002042 KEGG GENOME: T40179 ICTV: 202305401 ViralZone: family, genus Descriptions of Plant Viruses: 77

Scientific Name	Wheat dwarf virus [TAX:10834]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Mastrevirus
RefSeq	NC_003326 Wheat dwarf virus, complete genome. NC_075086 Wheat dwarf virus V1 gene, V2 gene, repA gene and Rep gene, isolate Barley.
DBLINKS	KEGG BRITE: NC_003326 NC_075086 KEGG GENOME: T40178 ICTV: 202303542 ViralZone: family, genus

Scientific Name	Wheat dwarf virus - [Sweden] [TAX:268789]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Mastrevirus; Wheat dwarf virus
GenBank	X02869 Wheat dwarf virus - [Sweden] complete genome.
Evidence	UniProt
DBLINKS	ViralZone: family, genus

Scientific Name	Wheat dwarf virus Bg17 [TAX:522359]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Mastrevirus; Wheat dwarf virus
GenBank	AM989927 Wheat dwarf virus Bg17 complete genome, barley strain.
Evidence	GenBank
Evidence	Literature
Reference	The nucleotide sequence of barley strain of Wheat dwarf virus isolated in Bulgaria
DBLINKS	ViralZone: family, genus

Scientific Name	Wheat dwarf virus H07 [TAX:558674]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Mastrevirus; Wheat dwarf virus
GenBank	FM210034 Wheat dwarf virus H07 complete genome, barley strain.
Evidence	GenBank
DBLINKS	ViralZone: family, genus