Escherichia coli DH5[alpha]

Escherichia coli DH5[alpha]

Scientific Name	Escherichia coli DH5[alpha] [TAX:668369]
Lineage	cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli

Known viruses (21)

Scientific Name	Citrobacter phage Shae_phiSM [TAX:3092604]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudoviricetes incertae sedis; Peduoviridae; Xuanwuvirus; unclassified Xuanwuvirus
GenBank	OR565851 Citrobacter phage Shae_phiSM, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class, family

Scientific Name	Escherichia phage Barry [TAX:2747780]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudoviricetes incertae sedis; Andersonviridae; Ounavirinae; Felixounavirus; Felixounavirus barry
GenBank	LR880803 Escherichia phage Barry genome assembly, chromosome: 1.
Evidence	Literature
Reference	PMID: 37668405
Authors	Kelly A, Went SC, Mariano G, Shaw LP, Picton DM, Duffner SJ, Coates I, Herdman-Grant R, Gordeeva J, Drobiazko A, Isaev A, Lee YJ, Luyten Y, Morgan RD, Weigele P, Severinov K, Wenner N, Hinton JCD, Blower TR
Title	Diverse Durham collection phages demonstrate complex BREX defense responses.
Journal	Appl Environ Microbiol. 2023 Sep 28;89(9):e0062323.
DBLINKS	ViralZone: class, class, class, genus

Scientific Name	Escherichia phage BB1 [TAX:2747781]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudoviricetes incertae sedis; Demerecviridae; Markadamsvirinae; Tequintavirus; Tequintavirus BB1
RefSeq	NC_106597 Escherichia phage BB1, complete genome.
Evidence	Literature
Reference	PMID: 37668405
Authors	Kelly A, Went SC, Mariano G, Shaw LP, Picton DM, Duffner SJ, Coates I, Herdman-Grant R, Gordeeva J, Drobiazko A, Isaev A, Lee YJ, Luyten Y, Morgan RD, Weigele P, Severinov K, Wenner N, Hinton JCD, Blower TR
Title	Diverse Durham collection phages demonstrate complex BREX defense responses.
Journal	Appl Environ Microbiol. 2023 Sep 28;89(9):e0062323.
DBLINKS	KEGG BRITE: NC_106597 ViralZone: family, class, genus, class, class

Scientific Name	Escherichia phage Paula [TAX:2747782]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudoviricetes incertae sedis; Stephanstirmvirinae; Justusliebigvirus; unclassified Justusliebigvirus
GenBank	LR865361 Escherichia phage Paula genome assembly, chromosome: 1.
Evidence	Literature
Reference	PMID: 37668405
Authors	Kelly A, Went SC, Mariano G, Shaw LP, Picton DM, Duffner SJ, Coates I, Herdman-Grant R, Gordeeva J, Drobiazko A, Isaev A, Lee YJ, Luyten Y, Morgan RD, Weigele P, Severinov K, Wenner N, Hinton JCD, Blower TR
Title	Diverse Durham collection phages demonstrate complex BREX defense responses.
Journal	Appl Environ Microbiol. 2023 Sep 28;89(9):e0062323.
DBLINKS	ViralZone: class, class, class

Scientific Name	Escherichia phage PMBT16 [TAX:3137282]
Lineage	Viruses; unclassified bacterial viruses
GenBank	PP554575 Escherichia phage PMBT16, complete genome.
Evidence	GenBank

Scientific Name	Escherichia phage vB-Eco-KMB37 [TAX:3093647]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudoviricetes incertae sedis; Stephanstirmvirinae; Justusliebigvirus; unclassified Justusliebigvirus
GenBank	OR525700 Escherichia phage vB-Eco-KMB37, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class

Scientific Name	Escherichia phage vB_EcoM_BMB16 [TAX:3403052]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Pantevenvirales; Straboviridae; Tevenvirinae; Tequatrovirus; Tequatrovirus BMB16
GenBank	PV102577 Escherichia phage vB_EcoM_BMB16, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: genus, family, class, class, class

Scientific Name	Escherichia phage vB_Eco_Alma [TAX:2824131]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudoviricetes incertae sedis; Vequintavirinae; Vequintavirus; unclassified Vequintavirus
GenBank	OV101294 Escherichia phage vB_Eco_Alma genome assembly, chromosome: 1.
Evidence	Literature
Reference	PMID: 37668405
Authors	Kelly A, Went SC, Mariano G, Shaw LP, Picton DM, Duffner SJ, Coates I, Herdman-Grant R, Gordeeva J, Drobiazko A, Isaev A, Lee YJ, Luyten Y, Morgan RD, Weigele P, Severinov K, Wenner N, Hinton JCD, Blower TR
Title	Diverse Durham collection phages demonstrate complex BREX defense responses.
Journal	Appl Environ Microbiol. 2023 Sep 28;89(9):e0062323.
DBLINKS	ViralZone: class, class, class

Scientific Name	Escherichia phage vB_Eco_Bam [TAX:2898833]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Autographivirales; Autotranscriptaviridae; Studiervirinae; Bamvirus; Bamvirus bam
GenBank	OW991346 Escherichia phage vB_Eco_Bam genome assembly, chromosome: 1.
Evidence	Literature
Reference	PMID: 37668405
Authors	Kelly A, Went SC, Mariano G, Shaw LP, Picton DM, Duffner SJ, Coates I, Herdman-Grant R, Gordeeva J, Drobiazko A, Isaev A, Lee YJ, Luyten Y, Morgan RD, Weigele P, Severinov K, Wenner N, Hinton JCD, Blower TR
Title	Diverse Durham collection phages demonstrate complex BREX defense responses.
Journal	Appl Environ Microbiol. 2023 Sep 28;89(9):e0062323.
DBLINKS	ViralZone: class, class, class, order

Scientific Name	Escherichia phage vB_Eco_CS16 [TAX:2804238]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudoviricetes incertae sedis; Dhillonvirus; unclassified Dhillonvirus
GenBank	LR999870 Escherichia phage vB_Eco_CS16 genome assembly, chromosome: 1.
Evidence	Literature
Reference	PMID: 37668405
Authors	Kelly A, Went SC, Mariano G, Shaw LP, Picton DM, Duffner SJ, Coates I, Herdman-Grant R, Gordeeva J, Drobiazko A, Isaev A, Lee YJ, Luyten Y, Morgan RD, Weigele P, Severinov K, Wenner N, Hinton JCD, Blower TR
Title	Diverse Durham collection phages demonstrate complex BREX defense responses.
Journal	Appl Environ Microbiol. 2023 Sep 28;89(9):e0062323.
DBLINKS	ViralZone: class, class, class, genus

Scientific Name	Escherichia phage vB_Eco_Jura [TAX:2804237]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudoviricetes incertae sedis; Schitoviridae; Enquatrovirinae; Enquatrovirus; unclassified Enquatrovirus
GenBank	LR999871 Escherichia phage vB_Eco_Jura genome assembly, chromosome: 1.
Evidence	Literature
Reference	PMID: 37668405
Authors	Kelly A, Went SC, Mariano G, Shaw LP, Picton DM, Duffner SJ, Coates I, Herdman-Grant R, Gordeeva J, Drobiazko A, Isaev A, Lee YJ, Luyten Y, Morgan RD, Weigele P, Severinov K, Wenner N, Hinton JCD, Blower TR
Title	Diverse Durham collection phages demonstrate complex BREX defense responses.
Journal	Appl Environ Microbiol. 2023 Sep 28;89(9):e0062323.
DBLINKS	ViralZone: genus, family, class, class, class

Scientific Name	Escherichia phage vB_Eco_Mak [TAX:2898836]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Autographivirales; Autotranscriptaviridae; Studiervirinae; unclassified Studiervirinae
GenBank	OX001577 Escherichia phage vB_Eco_Mak genome assembly, chromosome: 1.
Evidence	Literature
Reference	PMID: 37668405
Authors	Kelly A, Went SC, Mariano G, Shaw LP, Picton DM, Duffner SJ, Coates I, Herdman-Grant R, Gordeeva J, Drobiazko A, Isaev A, Lee YJ, Luyten Y, Morgan RD, Weigele P, Severinov K, Wenner N, Hinton JCD, Blower TR
Title	Diverse Durham collection phages demonstrate complex BREX defense responses.
Journal	Appl Environ Microbiol. 2023 Sep 28;89(9):e0062323.
DBLINKS	ViralZone: class, class, class, order

Scientific Name	Escherichia phage vB_Eco_Maverick [TAX:2776148]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudoviricetes incertae sedis; Dhillonvirus; Dhillonvirus maverick
RefSeq	NC_073077 Escherichia phage vB_Eco_Maverick genome assembly, chromosome: 1.
Evidence	Literature
Reference	PMID: 37668405
Authors	Kelly A, Went SC, Mariano G, Shaw LP, Picton DM, Duffner SJ, Coates I, Herdman-Grant R, Gordeeva J, Drobiazko A, Isaev A, Lee YJ, Luyten Y, Morgan RD, Weigele P, Severinov K, Wenner N, Hinton JCD, Blower TR
Title	Diverse Durham collection phages demonstrate complex BREX defense responses.
Journal	Appl Environ Microbiol. 2023 Sep 28;89(9):e0062323.
DBLINKS	KEGG BRITE: NC_073077 ICTV: 202318443 ViralZone: class, class, class, genus

Scientific Name	Escherichia phage vB_Eco_Sip [TAX:2831640]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudoviricetes incertae sedis; Drexlerviridae; Tempevirinae; Warwickvirus; Warwickvirus sip
RefSeq	NC_136442 Escherichia phage vB_Eco_Sip genome assembly, chromosome: 1.
Evidence	Literature
Reference	PMID: 37668405
Authors	Kelly A, Went SC, Mariano G, Shaw LP, Picton DM, Duffner SJ, Coates I, Herdman-Grant R, Gordeeva J, Drobiazko A, Isaev A, Lee YJ, Luyten Y, Morgan RD, Weigele P, Severinov K, Wenner N, Hinton JCD, Blower TR
Title	Diverse Durham collection phages demonstrate complex BREX defense responses.
Journal	Appl Environ Microbiol. 2023 Sep 28;89(9):e0062323.
DBLINKS	KEGG BRITE: NC_136442 ViralZone: class, family, class, class

Scientific Name	Escherichia phage vB_Eco_TB34 [TAX:2898837]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Pantevenvirales; Straboviridae; Krischvirus; unclassified Krischvirus
GenBank	OX001802 Escherichia phage vB_Eco_TB34 genome assembly, chromosome: 1.
Evidence	Literature
Reference	PMID: 37668405
Authors	Kelly A, Went SC, Mariano G, Shaw LP, Picton DM, Duffner SJ, Coates I, Herdman-Grant R, Gordeeva J, Drobiazko A, Isaev A, Lee YJ, Luyten Y, Morgan RD, Weigele P, Severinov K, Wenner N, Hinton JCD, Blower TR
Title	Diverse Durham collection phages demonstrate complex BREX defense responses.
Journal	Appl Environ Microbiol. 2023 Sep 28;89(9):e0062323.
DBLINKS	ViralZone: class, class, class, family

Scientific Name	Escherichia phage vB_Eco_Tribble [TAX:2898838]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudoviricetes incertae sedis; Andersonviridae; Ounavirinae; Felixounavirus; Felixounavirus tribble
GenBank	OX016465 Escherichia phage vB_Eco_Tribble genome assembly, chromosome: 1.
Evidence	Literature
Reference	PMID: 37668405
Authors	Kelly A, Went SC, Mariano G, Shaw LP, Picton DM, Duffner SJ, Coates I, Herdman-Grant R, Gordeeva J, Drobiazko A, Isaev A, Lee YJ, Luyten Y, Morgan RD, Weigele P, Severinov K, Wenner N, Hinton JCD, Blower TR
Title	Diverse Durham collection phages demonstrate complex BREX defense responses.
Journal	Appl Environ Microbiol. 2023 Sep 28;89(9):e0062323.
DBLINKS	ViralZone: class, class, class, genus

Scientific Name	Shigella phage CM1 [TAX:2591055]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudoviricetes incertae sedis; Vequintavirinae; Vequintavirus; Vequintavirus CM1
RefSeq	NC_100732 Shigella phage CM1, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_100732 ViralZone: class, class, class

Scientific Name	Shigella phage JK16 [TAX:2591057]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudoviricetes incertae sedis; Drexlerviridae; Tempevirinae; Warwickvirus; Warwickvirus JK16
RefSeq	NC_049814 Shigella phage JK16, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 31561510
Authors	Kaczorowska J, Casey E, Neve H, Franz CMAP, Noben JP, Lugli GA, Ventura M, Sinderen DV, Mahony J
Title	A Quest of Great Importance-Developing a Broad Spectrum Escherichiacoli Phage Collection.
Journal	Viruses. 2019 Sep 26;11(10).
DBLINKS	KEGG BRITE: NC_049814 ICTV: 202312091 ViralZone: class, family, class, class

Scientific Name	Shigella phage JK42 [TAX:2591062]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Pantevenvirales; Straboviridae; Tevenvirinae; Mosigvirus; Mosigvirus mar005p1
GenBank	MK962756 Shigella phage JK42, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class, family

Scientific Name	Shigella phage JK45 [TAX:2591063]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Pantevenvirales; Straboviridae; Tevenvirinae; Mosigvirus; Mosigvirus jaykay; Tequatrovirus jaykay
RefSeq	NC_054940 Shigella phage JK45, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 31561510
Authors	Kaczorowska J, Casey E, Neve H, Franz CMAP, Noben JP, Lugli GA, Ventura M, Sinderen DV, Mahony J
Title	A Quest of Great Importance-Developing a Broad Spectrum Escherichiacoli Phage Collection.
Journal	Viruses. 2019 Sep 26;11(10).
DBLINKS	KEGG BRITE: NC_054940 ICTV: 202312010 ViralZone: class, class, class, family

Scientific Name	Shigella phage JK55 [TAX:2591064]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudoviricetes incertae sedis; Andersonviridae; Ounavirinae; Felixounavirus; Felixounavirus JK55
GenBank	MK962758 Shigella phage JK55, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class, genus