Oncorhynchus mykiss

Oncorhynchus mykiss

Scientific Name	Oncorhynchus mykiss [TAX:8022]
Lineage	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Osteoglossocephalai; Clupeocephala; Euteleosteomorpha; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
DBLINKS	KEGG GENOME: T07259

Known viruses (11)

Scientific Name	Chinook salmon bafinivirus [TAX:1611837]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Tornidovirineae; Tobaniviridae; Piscanivirinae; Oncotshavirus; Salnivirus; Chinook salmon nidovirus 1
RefSeq	NC_026812 Chinook salmon bafinivirus isolate NIDO, complete genome.
Evidence	Literature
Reference	PMID: 32466150
Authors	Cano I, Stone D, Savage J, Wood G, Mulhearn B, Gray J, Stinton N, Ross S, Bonar M, Taylor NGH, Bateman KS, Feist SW
Title	Isolation of a Chinook Salmon Bafinivirus (CSBV) in Imported Goldfish <i>Carassius auratus</i> L. in the United Kingdom and Evaluation of Its Virulence in Resident Fish Species.
Journal	Viruses. 2020 May 25;12(5).
Comment	Culture cell line: RTG-2
DBLINKS	KEGG BRITE: NC_026812 ICTV: 202301894 ViralZone: family

Scientific Name	Etheostoma fonticola aquareovirus [TAX:1862978]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Spinareoviridae; Aquareovirus; unclassified Aquareovirus
RefSeq	NC_030405 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 1, complete sequence. NC_030406 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 6, complete sequence. NC_030407 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 7, complete sequence. NC_030408 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 8, complete sequence. NC_030409 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 9, complete sequence. NC_030410 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 10, complete sequence. NC_030411 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 11, complete sequence. NC_030412 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 2, complete sequence. NC_030413 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 3, complete sequence. NC_030414 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 4, complete sequence. NC_030415 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 5, complete sequence.
Evidence	Literature
Reference	PMID: 30198485
Authors	Iwanowicz LR, Iwanowicz DD, Adams CR, Lewis TD, Brandt TM, Sanders LR, Cornman RS
Title	Isolation, characterization and molecular identification of a novel aquareovirus that infects endangered fountain darter Etheostoma fonticola.
Journal	Dis Aquat Organ. 2018 Sep 10;130(2):95-108.
Comment	Culture cell line:CHSE-214, rainbow trout gonad-2, fathead minnow cells
DBLINKS	KEGG BRITE: NC_030405 NC_030406 NC_030407 NC_030408 NC_030409 NC_030410 NC_030411 NC_030412 NC_030413 NC_030414 NC_030415 ViralZone: family, genus

Scientific Name	Genomoviridae sp. [TAX:2202565]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; unclassified Genomoviridae
RefSeq	NC_075288 MAG: Genomoviridae sp. isolate ctcj270, complete genome. NC_075305 MAG: Genomoviridae sp. isolate ctcg63, complete genome. NC_075306 MAG: Genomoviridae sp. isolate cthd64, complete genome. NC_076296 MAG: Genomoviridae sp. isolate ctbb79, complete genome. NC_076297 MAG: Genomoviridae sp. isolate ctce776, complete genome. NC_076298 MAG: Genomoviridae sp. isolate ctbh39, complete genome. NC_076299 MAG: Genomoviridae sp. isolate ctba85, complete genome. NC_076300 MAG: Genomoviridae sp. isolate ctbh29, complete genome. NC_076301 MAG: Genomoviridae sp. isolate ctbf84, complete genome. NC_076302 MAG: Genomoviridae sp. isolate ctcf212, complete genome. NC_076303 MAG: Genomoviridae sp. isolate ctjb817, complete genome. NC_076304 MAG: Genomoviridae sp. isolate ctcg218, complete genome. NC_076305 MAG: Genomoviridae sp. isolate ctbh806, complete genome. NC_076306 MAG: Genomoviridae sp. isolate ctca70, complete genome. NC_076307 MAG: Genomoviridae sp. isolate ctgb66, complete genome. NC_076308 MAG: Genomoviridae sp. isolate ctea93, complete genome. NC_076309 MAG: Genomoviridae sp. isolate ctbe80, complete genome. NC_076310 MAG: Genomoviridae sp. isolate ctjj82, complete genome. NC_076311 MAG: Genomoviridae sp. isolate ctda73, complete genome. NC_076312 MAG: Genomoviridae sp. isolate ctdb7, complete genome. NC_076313 MAG: Genomoviridae sp. isolate ctbi89, complete genome. NC_076314 MAG: Genomoviridae sp. isolate cthh214, complete genome. NC_076315 MAG: Genomoviridae sp. isolate ctdb242, complete genome. NC_076316 MAG: Genomoviridae sp. isolate ctda_5, complete genome. NC_076317 MAG: Genomoviridae sp. isolate ctbd78, complete genome. NC_076318 MAG: Genomoviridae sp. isolate ctcd252, complete genome. NC_076319 MAG: Genomoviridae sp. isolate ctij207, complete genome. NC_076320 MAG: Genomoviridae sp. isolate cted72, complete genome. NC_076321 MAG: Genomoviridae sp. isolate cthi275, complete genome. NC_076322 MAG: Genomoviridae sp. isolate ctjg823, complete genome. NC_076323 MAG: Genomoviridae sp. isolate ctdb80, complete genome. NC_076324 MAG: Genomoviridae sp. isolate ctbi78, complete genome. NC_076325 MAG: Genomoviridae sp. isolate ctcj747, complete genome. NC_076326 MAG: Genomoviridae sp. isolate ctcg277, complete genome. NC_076327 MAG: Genomoviridae sp. isolate ctce205, complete genome. NC_076328 MAG: Genomoviridae sp. isolate ctci83, complete genome. NC_076329 MAG: Genomoviridae sp. isolate ctbf8, complete genome. NC_076330 MAG: Genomoviridae sp. isolate ctji71, complete genome. NC_076331 MAG: Genomoviridae sp. isolate ctjh74, complete genome. NC_076332 MAG: Genomoviridae sp. isolate ctbb31, complete genome. NC_076333 MAG: Genomoviridae sp. isolate ctba76, complete genome. NC_076334 MAG: Genomoviridae sp. isolate ctgi38, complete genome. NC_076335 MAG: Genomoviridae sp. isolate ctbi86, complete genome. NC_076480 MAG: Genomoviridae sp. isolate bif24cir1, complete genome. NC_076493 MAG: Genomoviridae sp. isolate 6434_414, complete genome.
DBLINKS	KEGG BRITE: NC_075288 NC_075305 NC_075306 NC_076296 NC_076297 NC_076298 NC_076299 NC_076300 NC_076301 NC_076302 NC_076303 NC_076304 NC_076305 NC_076306 NC_076307 NC_076308 NC_076309 NC_076310 NC_076311 NC_076312 NC_076313 NC_076314 NC_076315 NC_076316 NC_076317 NC_076318 NC_076319 NC_076320 NC_076321 NC_076322 NC_076323 NC_076324 NC_076325 NC_076326 NC_076327 NC_076328 NC_076329 NC_076330 NC_076331 NC_076332 NC_076333 NC_076334 NC_076335 NC_076480 NC_076493 ICTV: 202308943, 202308994, 202309006, 202308954, 202309004, 202308947, 202308997, 202308945, 202308950, 202308953, 202308976, 202308978, 202308982, 202308989, 202308993, 202309009, 202308941, 202308948, 202308951, 202308952, 202308985, 202308957, 202308963, 202309023, 202309020, 202309054, 202309055, 202309058, 202309056, 202309047, 202309060, 202309048, 202309051, 202309041, 202309050, 202309059, 202309042, 202309074, 202309073, 202309080, 202309083, 202309081, 202309094, 202309097, 202309098 ViralZone: family

Scientific Name	Infectious hematopoietic necrosis virus [TAX:11290]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Gammarhabdovirinae; Novirhabdovirus; Novirhabdovirus salmonid
RefSeq	NC_001652 Infectious hematopoietic necrosis virus, complete genome.
Evidence	Literature
Reference	PMID: 8578857
Authors	Morzunov SP, Winton JR, Nichol ST
Title	The complete genome structure and phylogenetic relationship of infectious hematopoietic necrosis virus.
Journal	Virus Res. 1995 Oct;38(2-3):175-92.
Comment	Culture cell line:CHSE-214
DBLINKS	KEGG BRITE: NC_001652 ICTV: 202301739 ViralZone: family

Scientific Name	Infectious pancreatic necrosis virus [TAX:11002]
Lineage	Viruses; Riboviria; Orthornavirae; Birnaviridae; Aquabirnavirus; Aquabirnavirus salmonidae
RefSeq	NC_001915 Infectious pancreatic necrosis virus segment A, complete sequence. NC_001916 Infectious pancreatic necrosis virus segment B, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001915 NC_001916 ICTV: 202302748 ViralZone: genus, family

Scientific Name	Infectious salmon anemia virus [TAX:2907958]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Insthoviricetes; Articulavirales; Orthomyxoviridae; Isavirus; Isavirus salaris
RefSeq	NC_006497 Infectious salmon anemia virus segment 8, complete sequence. NC_006505 Infectious salmon anemia virus isolate 810/9/99 PB2 polymerase (PB2) mRNA, complete cds.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_006497 NC_006505 ICTV: 202303964 ViralZone: genus

Scientific Name	Novirhabdovirus hirame [TAX:1980915]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Gammarhabdovirinae; Novirhabdovirus
RefSeq	NC_005093 Hirame rhabdovirus, complete genome.
Evidence	Literature
Reference	PMID: 15567027
Authors	Kim DH, Oh HK, Eou JI, Seo HJ, Kim SK, Oh MJ, Nam SW, Choi TJ
Title	Complete nucleotide sequence of the hirame rhabdovirus, a pathogen of marine fish.
Journal	Virus Res. 2005 Jan;107(1):1-9.
Comment	Culture cell line: RTG-2 cells
DBLINKS	KEGG BRITE: NC_005093 ICTV: 202301737 ViralZone: family

Scientific Name	Rainbow trout orthomyxovirus-1 [TAX:1954184]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Insthoviricetes; Articulavirales; Orthomyxoviridae; Mykissvirus; Mykissvirus tructae
RefSeq	NC_078521 Rainbow trout orthomyxovirus-1 strain Rainbow/Idaho/347/1997 putative nucleoprotein (NP) gene, complete cds. NC_078522 Rainbow trout orthomyxovirus-1 strain Rainbow/Idaho/347/1997 putative polymerase basic 1 (PB1) gene, complete cds. NC_078523 Rainbow trout orthomyxovirus-1 strain Rainbow/Idaho/347/1997 putative hemagglutinin (HA) gene, complete cds. NC_078524 Rainbow trout orthomyxovirus-1 strain Rainbow/Idaho/347/1997 putative matrix protein 1 (M1-M2) and putative matrix protein 2 (M1-M2) genes, complete cds. NC_078525 Rainbow trout orthomyxovirus-1 strain Rainbow/Idaho/347/1997 putative nonstructural protein 1 (NS1-NEP) and putative nuclear export protein (NS1-NEP) genes, complete cds. NC_078526 Rainbow trout orthomyxovirus-1 strain Rainbow/Idaho/347/1997 putative neuraminidase (NA) gene, complete cds. NC_078527 Rainbow trout orthomyxovirus-1 strain Rainbow/Idaho/347/1997 putative polymerase acidic (PA) gene, complete cds. NC_078528 Rainbow trout orthomyxovirus-1 strain Rainbow/Idaho/347/1997 putative polymerase basic 2 (PB2) gene, complete cds.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 28088362
Authors	Batts WN, LaPatra SE, Katona R, Leis E, Ng TFF, Brieuc MSO, Breyta RB, Purcell MK, Conway CM, Waltzek TB, Delwart E, Winton JR
Title	Molecular characterization of a novel orthomyxovirus from rainbow and steelhead trout (Oncorhynchus mykiss).
Journal	Virus Res. 2017 Feb 15;230:38-49.
DBLINKS	KEGG BRITE: NC_078521 NC_078522 NC_078523 NC_078524 NC_078525 NC_078526 NC_078527 NC_078528 ICTV: 202312228

Scientific Name	Salmonid herpesvirus 2 [TAX:31771]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Alloherpesviridae; Salmovirus; Salmovirus salmonidallo2
RefSeq	NC_075802 Salmonid herpesvirus 2 isolate NeVTA DNA polymerase gene, partial cds.
Evidence	Literature
Reference	PMID: 9565695
Authors	Belogortseva N, Molchanova V, Glazunov V, Evtushenko E, Luk'yanov P
Title	N-Acetyl-D-glucosamine-specific lectin from the ascidian Didemnum ternatanum.
Journal	Biochim Biophys Acta. 1998 Apr 10;1380(2):249-56.
Comment	Culture cell line: CHSE, RTG
DBLINKS	KEGG BRITE: NC_075802 ICTV: 202301409 ViralZone: family, genus

Scientific Name	Sleeping disease virus [TAX:78540]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Togaviridae; Alphavirus; Salmon pancreas disease virus
RefSeq	NC_003433 Sleeping disease virus, complete genome.
Evidence	RefSeq
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003433 ICTV: 202305104

Scientific Name	Victorian trout aquabirnavirus [TAX:1661392]
Lineage	Viruses; Riboviria; Orthornavirae; Birnaviridae; Aquabirnavirus; unclassified Aquabirnavirus
RefSeq	NC_030242 Victorian trout aquabirnavirus isolate VTAB 10-04677 segment A, complete sequence. NC_030244 Victorian trout aquabirnavirus isolate VTAB 10-04677 segment B, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 26378403
Authors	Mohr PG, Moody NJ, Williams LM, Hoad J, St J Crane M
Title	Molecular characterization of Tasmanian aquabirnaviruses from 1998 to 2013.
Journal	Dis Aquat Organ. 2015 Sep 17;116(1):1-9.
DBLINKS	KEGG BRITE: NC_030242 NC_030244 ViralZone: genus, family