Salmo salar

Salmo salar

Scientific Name	Salmo salar [TAX:8030]
Lineage	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Osteoglossocephalai; Clupeocephala; Euteleosteomorpha; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
DBLINKS	KEGG GENOME: T04363

Known viruses (12)

Scientific Name	Atlantic salmon calicivirus [TAX:1489836]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Salovirus; Salovirus nordlandense; Nordland virus
RefSeq	NC_024031 Atlantic salmon calicivirus isolate Nordland/2011, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 25203050
Authors	Mikalsen AB, Nilsen P, Frøystad-Saugen M, Lindmo K, Eliassen TM, Rode M, Evensen O
Title	Characterization of a novel calicivirus causing systemic infection in atlantic salmon (Salmo salar L.): proposal for a new genus of caliciviridae.
Journal	PLoS One. 2014;9(9):e107132.
DBLINKS	KEGG BRITE: NC_024031 ICTV: 202306503 ViralZone: family

Scientific Name	Atlantic salmon swim bladder sarcoma virus [TAX:348296]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; unclassified Retroviridae
RefSeq	NC_007654 Atlantic salmon swim bladder sarcoma virus, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 16501103
Authors	Paul TA, Quackenbush SL, Sutton C, Casey RN, Bowser PR, Casey JW
Title	Identification and characterization of an exogenous retrovirus from atlantic salmon swim bladder sarcomas.
Journal	J Virol. 2006 Mar;80(6):2941-8.
DBLINKS	KEGG BRITE: NC_007654 ViralZone: family

Scientific Name	Infectious salmon anemia virus [TAX:2907958]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Insthoviricetes; Articulavirales; Orthomyxoviridae; Isavirus; Isavirus salaris
RefSeq	NC_006497 Infectious salmon anemia virus segment 8, complete sequence. NC_006505 Infectious salmon anemia virus isolate 810/9/99 PB2 polymerase (PB2) mRNA, complete cds.
Evidence	RefSeq
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_006497 NC_006505 ICTV: 202303964 ViralZone: genus

Scientific Name	Isavirus salaris [TAX:55987]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Insthoviricetes; Articulavirales; Orthomyxoviridae; Isavirus
RefSeq	NC_006498 Infectious salmon anemia virus segment 7, complete sequence. NC_006499 Infectious salmon anemia virus segment 6, complete sequence. NC_006500 Infectious salmon anemia virus segment 5 putative acetylesterase (P3) gene, complete cds. NC_006501 Infectious salmon anemia virus segment 4, complete sequence. NC_006502 Infectious salmon anemia virus segment 3, complete sequence. NC_006503 Infectious salmon anemia virus segment 2, complete sequence.
Evidence	UniProt
Evidence	Literature
Reference	PMID: 11807235
Authors	Clouthier SC, Rector T, Brown NEC, Anderson ED
Title	Genomic organization of infectious salmon anaemia virus.
Journal	J Gen Virol. 2002 Feb;83(Pt 2):421-428.
DBLINKS	KEGG BRITE: NC_006498 NC_006499 NC_006500 NC_006501 NC_006502 NC_006503 ICTV: 202303964 ViralZone: genus

Scientific Name	Pilchard orthomyxovirus [TAX:2732827]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Insthoviricetes; Articulavirales; Orthomyxoviridae; Sardinovirus; Sardinovirus pilchardi
RefSeq	NC_078605 Pilchard orthomyxovirus isolate POMV14-01514 segment 5, complete sequence. NC_078606 Pilchard orthomyxovirus isolate POMV14-01514 segment 7, complete sequence. NC_078607 Pilchard orthomyxovirus isolate POMV14-01514 segment 1, complete sequence. NC_078608 Pilchard orthomyxovirus isolate POMV14-01514 segment 4, complete sequence. NC_078609 Pilchard orthomyxovirus isolate POMV14-01514 segment 8, complete sequence. NC_078610 Pilchard orthomyxovirus isolate POMV14-01514 segment 3, complete sequence. NC_078611 Pilchard orthomyxovirus isolate POMV14-01514 segment 2, complete sequence. NC_078612 Pilchard orthomyxovirus isolate POMV14-01514 segment 6, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 33007914
Authors	Samsing F, Alexandre P, Rigby M, Taylor RS, Chong R, Wynne JW
Title	Transcriptome Response of Atlantic Salmon (Salmo salar) to a New Piscine Orthomyxovirus.
Journal	Pathogens. 2020 Sep 30;9(10).
DBLINKS	KEGG BRITE: NC_078605 NC_078606 NC_078607 NC_078608 NC_078609 NC_078610 NC_078611 NC_078612 ICTV: 202312230

Scientific Name	Piscine myocarditis virus AL V-708 [TAX:912320]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Chrymotiviricetes; Ghabrivirales; Totiviridae; unclassified Totiviridae
RefSeq	NC_015639 Piscine myocarditis virus AL V-708, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_015639 ICTV: 202318242 ViralZone: family

Scientific Name	Piscine orthoreovirus [TAX:1157337]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Spinareoviridae; Orthoreovirus
RefSeq	NC_036468 Piscine reovirus isolate CGA280-05 core turret protein mRNA, complete cds. NC_036469 Piscine reovirus isolate CGA280-05 core NTPase mRNA, complete cds. NC_036470 Piscine reovirus isolate CGA280-05 outer shell protein mRNA, complete cds. NC_036471 Piscine reovirus isolate CGA280-05 non-structural protein mRNA, complete cds. NC_036472 Piscine reovirus isolate CGA280-05 outer clamp protein and non-structural protein genes, complete cds. NC_036473 Piscine reovirus isolate CGA280-05 core clamp protein mRNA, complete cds. NC_036474 Piscine reovirus isolate CGA280-05 non-structural RNA protein mRNA, complete cds. NC_036475 Piscine reovirus isolate CGA280-05 outer fiber protein mRNA, complete cds. NC_036476 Piscine reovirus isolate CGA280-05 core shell protein mRNA, complete cds. NC_036477 Piscine reovirus isolate CGA280-05 core RNA-dependent RNA polymerase mRNA, complete cds.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 21067578
Authors	Løvoll M, Wiik-Nielsen J, Grove S, Wiik-Nielsen CR, Kristoffersen AB, Faller R, Poppe T, Jung J, Pedamallu CS, Nederbragt AJ, Meyerson M, Rimstad E, Tengs T
Title	A novel totivirus and piscine reovirus (PRV) in Atlantic salmon (Salmo salar) with cardiomyopathy syndrome (CMS).
Journal	Virol J. 2010 Nov 10;7:309.
DBLINKS	KEGG BRITE: NC_036468 NC_036469 NC_036470 NC_036471 NC_036472 NC_036473 NC_036474 NC_036475 NC_036476 NC_036477 ICTV: 202304974 ViralZone: genus, family

Scientific Name	Salmon aquaparamyxovirus [TAX:381543]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Feraresvirinae; Aquaparamyxovirus; Aquaparamyxovirus salmonis
RefSeq	NC_025360 Atlantic salmon paramyxovirus isolate ASPV/Yrkje371/95, complete genome. NC_076269 Salmon aquaparamyxovirus strain A, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_025360 NC_076269 ICTV: 202307559, 202301589 ViralZone: genus, family

Scientific Name	Salmon gill poxvirus [TAX:1680908]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Salmonpoxvirus; Salmon gillpox virus
RefSeq	NC_027707 Salmon gill poxvirus, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_027707 ICTV: 202307156

Scientific Name	Salmon pancreas disease virus [TAX:84589]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Togaviridae; Alphavirus
RefSeq	NC_003930 Salmon pancreas disease virus, complete genome.
Evidence	UniProt
Evidence	Literature
Reference	PMID: 12021349
Authors	Weston J, Villoing S, Brémont M, Castric J, Pfeffer M, Jewhurst V, McLoughlin M, Rødseth O, Christie KE, Koumans J, Todd D
Title	Comparison of two aquatic alphaviruses, salmon pancreas disease virus and sleeping disease virus, by using genome sequence analysis, monoclonal reactivity, and cross-infection.
Journal	J Virol. 2002 Jun;76(12):6155-63.
Comment	Culture cell line: CHSE-214
DBLINKS	KEGG BRITE: NC_003930

Scientific Name	Salmonid alphavirus subtype 3 [TAX:1183064]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Togaviridae; Alphavirus; Salmon pancreas disease virus
GenBank	JQ799139 Salmonid alphavirus subtype 3 isolate H10, complete genome.
Evidence	GenBank

Scientific Name	Sleeping disease virus [TAX:78540]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Togaviridae; Alphavirus; Salmon pancreas disease virus
RefSeq	NC_003433 Sleeping disease virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003433 ICTV: 202305104