KEGG   Anas platyrhynchos (mallard): 101794103
Entry
101794103         CDS       T02816                                 
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
apla  Anas platyrhynchos (mallard)
Pathway
apla03030  DNA replication
apla03410  Base excision repair
apla03420  Nucleotide excision repair
apla03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:apla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    101794103 (RFC5)
   03410 Base excision repair
    101794103 (RFC5)
   03420 Nucleotide excision repair
    101794103 (RFC5)
   03430 Mismatch repair
    101794103 (RFC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:apla03032]
    101794103 (RFC5)
   03036 Chromosome and associated proteins [BR:apla03036]
    101794103 (RFC5)
   03400 DNA repair and recombination proteins [BR:apla03400]
    101794103 (RFC5)
DNA replication proteins [BR:apla03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    101794103 (RFC5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    101794103 (RFC5)
Chromosome and associated proteins [BR:apla03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    101794103 (RFC5)
DNA repair and recombination proteins [BR:apla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     101794103 (RFC5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    101794103 (RFC5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_24 AAA_16 AAA_22 AAA_11 AAA_assoc_2 DEAD AAA_14 RuvB_N DUF815 DNA_pol3_delta AAA_5 ResIII AAA_19 AAA_30 TIP49 PhoH TniB AAA_7 ATPase_2 AAA_25 nSTAND3 Tn7_Tnp_TnsA_C Mg_chelatase Hydantoinase_B Thioredoxin_6 AAA_3 bpMoxR Gp44_lid AAA_18
Other DBs
NCBI-GeneID: 101794103
NCBI-ProteinID: XP_027325600
Ensembl: ENSAPLG00000003227
EnsemblRapid: ENSAPLG00030015418
Position
16:complement(5841412..5844293)
AA seq 329 aa
MAAAGGRNLPWVEKYRPRELSELVSHRDILSTIQRFISEDRLPHLLLYGPPGTGKTSTIL
ACARQLYRDREFSSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMT
QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQ
EEGVDVSEDGMKALVTLSSGDMRRALNILQSTAMAFGKVTEENVYTCTGHPLKSDIANIL
DWMLNLDFSTAYRKITELKTLKGLALQDILTEIHLFVHRVDFPPSVRIQLLIKMADIEYR
LAAGTSEKVQLSSLVAAFQVTRDLIVAEA
NT seq 990 nt   +upstreamnt  +downstreamnt
atggcggcggcgggcgggaggaacctgccctgggtggagaagtaccggccaagggagctc
tccgagctggtgtcgcaccgggacatcctcagcaccatccagcggttcatcagcgaggac
cgcctgccccacctcctcctctatggcccccccggcaccggcaagacctccaccatcctg
gcgtgtgcccggcagctctaccgggaccgagagttcagctccatggtgctggagctgaac
gcctcggacgaccggggaatcgacatcgtcagggggcccatcctgagcttcgccagcacc
aggaccatcttcaagaaaggcttcaagctcgtcatcctggacgaagccgatgccatgact
caggacgcccagaacgccctgaggcgagtgatcgagaagttcaccgaaaacacccgcttc
tgcctcatctgcaactacctctccaagatcatccccgcgctgcagtcccgctgcacccga
ttccgcttcgggcccctcaccccggagctgatggtgccccggctgcagcacgtcatacag
gaggagggggtggatgtgagcgaggacgggatgaaggcgctggtgaccctctcgagtggt
gacatgcgccgagccctgaacatcctgcagagcaccgccatggccttcgggaaggtgacg
gaggagaacgtctacacctgcacggggcatcccctcaagtccgacatcgccaacatcctc
gactggatgctcaacctggacttctccaccgcctatcgcaaaatcaccgagctgaagacg
ctgaagggcttggccctgcaggacatcctgaccgagatccacctgtttgtgcacagagtc
gatttcccaccctcggtccgcatccagctgctgatcaagatggcagatatcgagtaccgg
ctggctgcaggaacaagcgagaaggttcagctgagctccctcgtcgcggctttccaagtc
accagggacctgatcgtggccgaagcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (33)   
   Pfam (33)   
All databases (56)   

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