KEGG   Corynebacterium imitans: CIMIT_07900
Entry
CIMIT_07900       CDS       T03237                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
cii  Corynebacterium imitans
Pathway
cii03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cii00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CIMIT_07900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cii03400]
    CIMIT_07900
DNA repair and recombination proteins [BR:cii03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CIMIT_07900
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      CIMIT_07900
SSDB
Motif
Pfam: UvrA_DNA-bind ABC_tran AAA_16 AAA_29 nSTAND1 SMC_N DnaJ_CXXCXGXG AAA_21 Anti-TRAP DUF87 RsgA_GTPase Lar_restr_allev AAA_33 AAA_23 FtsK_SpoIIIE AAA_22 DUF5351 Viral_helicase1 LysW-like_globular
Other DBs
NCBI-ProteinID: AIJ33839
UniProt: A0A076NH72
Position
complement(1658947..1661364)
AA seq 805 aa
MHDNRDIRVRDAHLHNLRNVDVDIPRGTLVAVTGVSGSGKSSLAFGTIHGEGQRRYLESV
VPFARRLIGSAVDPQVGSVDGLPPTVALEQSTSGGGARSTVGTVSALSNSIRLLYSRCGE
NPEGLYSDSFSPNTPEGMCPTCQGTGVVHEPTEASMVPDPSLSIEDGAIAAWPGAWAGKN
FHDILATLGFDLDSPWRDLPKKDREWILFTDERPVVTVKPLRGEDQIQRNYKGTWRSVAS
YLTNTLAETQSDTLRKRVLSYMVSRQCETCHGRRLNPKALEVTYAGMPIDALGALPLDRV
YEVLAAQEPAEGSAEDLLLKQILPALRSALDLGLAHLSLDRPAPTLSAGELQRIRLSSQL
RSGLFGVTYVLDEPSAGLHPDERGAVLDICRRFIESGNSVLLVEHDMELVAQTDWLVDVG
PLAGEGGGKVLYSGPTNEYAGDAPTARALANRTLRLNSEPRDAAGSLGLSGVQARSIDGL
DVSFGLGQFTAVAGVSGSGKSTLVSTVLAGLLRDAAANVVDEDDGEEAGEWSVGKHAGFD
AVRRVVQITQKPIGRTPRSTLATYTGLFDGVRKLFAGTSEAKRRKWTVSRFSYNVKQGQC
PTCGGAGKIEVELVFLPGSYTTCPDCGGARYNDETLEVTWEGRTIADVLELTVDEAAEVF
AEEPKILRAVETLQAVGLGYLRLGQGAPELSGGEAQRIKLATELQRSRNSRRGHTVYLLD
EPTTGLHPADVALLVTELNSLVDAGQTVIVVEHDTSVLAQADRIIEMGPGAGAEGGEIVA
SGTPAELAACDTPTGRVLAERAARV
NT seq 2418 nt   +upstreamnt  +downstreamnt
atgcatgacaatcgagacatccgtgtacgcgacgcccacctgcacaacctgcgcaacgtg
gatgtggatattccgcgcggcacactcgtcgcggtcacgggcgtgtctggctcagggaag
tcctcgctcgcttttggcaccatccatggtgagggccagcgccgctacctggaatcggtg
gtgccctttgcccgccgcctgatcggctcggcggtggacccgcaagtcggctccgtcgac
ggtctgccgccgacggttgcgctggagcagtccacctcgggcggtggggcgcgttctacg
gtcgggaccgtctcggcgctgtcgaatagcatccggctgctgtactcgcgctgcggggag
aacccggagggcctgtactccgattccttttctccgaacacgcccgagggcatgtgcccg
acctgtcagggcaccggcgtggtccatgagccgaccgaggcctccatggtgccggatcct
tcgctttccatcgaggacggtgccatcgccgcctggcccggcgcgtgggcgggcaagaac
ttccacgacattctggccaccctgggctttgatctggactcgccctggcgggacctgccc
aaaaaggaccgcgagtggatcctgtttaccgacgagcggcccgtcgtcactgtcaaacct
ttgcgcggagaggatcagatccagcgcaattacaagggcacgtggcgctcggtggcctcg
tatctgaccaacacgctcgccgagacccagtcggataccctgcgcaagcgcgtgctcagc
tacatggtctcccgccagtgcgagacctgccacggccggcgtctgaacccgaaggcactc
gaggtcacctacgcgggcatgcctatcgacgccctcggcgcgcttcccctcgaccgcgtc
tacgaggtgctcgccgcgcaggaacctgccgaaggatcagccgaggacctgttgctgaag
cagatcctgcccgcgctgcgctccgcgctcgatctcggccttgcgcacctgagcctggac
cgtcccgccccgacactgtccgcaggcgagctgcaacgcatccgcctttcctcgcagctg
cgctcggggcttttcggagtcacttacgtcctcgacgagccctccgcgggcctgcacccg
gacgagcgcggtgccgtgctggatatctgccgccgcttcattgagtccggcaactccgtc
ctcctggtcgaacacgacatggagctggttgcccaaaccgactggctcgtcgacgtcggc
ccgctcgctggcgagggcggcggcaaggtgctctactcgggacccaccaacgagtacgcg
ggcgacgcgccgaccgcccgcgcgctggccaaccggacgctgcgcttgaacagtgagccc
cgcgatgctgccggttcgcttgggctgtccggcgtgcaggcgcggtccatcgacgggttg
gacgtctcttttggactcggccagttcactgccgtggcgggcgtgtccggctccggcaag
tccaccttggtcagcaccgtgcttgcgggtttgcttcgcgacgccgccgcaaacgtggtc
gacgaggacgacggcgaagaggcgggggagtggagcgtcgggaagcatgcaggcttcgac
gcggtgcgccgggtcgtgcagatcacccagaagccgatcggccgcacgccgcgctcgacg
cttgccacgtatacggggctcttcgatggtgttcggaaacttttcgccggtacttccgaa
gcgaagcggcgcaagtggaccgtctcgcgcttttcctacaacgtgaagcaaggccagtgc
ccgacctgcggcggtgcgggcaagatcgaggtcgagctggtgttcctgcccggctcctac
accacctgcccggactgcggcggcgcgcgctataacgacgagaccctcgaggtgacctgg
gaggggcgcaccatcgccgacgtgctggagcttacggtcgacgaggccgcggaggtgttc
gccgaggagccgaagatcctgcgcgcggtggagaccctgcaggcggtggggctgggctac
ctccgactcggccagggcgcgcccgagctgtccggcggcgaagcgcaacgcatcaagctg
gccaccgagctgcagcgctcccgcaactcgcgccgcggccacaccgtctacctgctcgac
gagccgaccaccggcctgcaccccgccgacgtcgcgctactggtcaccgagctcaacagc
ctggttgacgcgggccagaccgtcatcgtggtcgagcacgacacctcggtgctcgcgcag
gccgaccggatcatcgaaatgggcccgggcgcgggtgccgaaggcggcgaaattgttgct
tctggtactccggccgagctggctgcgtgcgacacgccgacggggcgggtgctcgccgag
cgcgcagcgcgggtctaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (19)   
   Pfam (19)   
All databases (27)   

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