KEGG   Cucurbita maxima (winter squash): 111481594
Entry
111481594         CDS       T05246                                 
Name
(RefSeq) DNA-binding protein SMUBP-2
  KO
K19036  ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3]
Organism
cmax  Cucurbita maxima (winter squash)
Brite
KEGG Orthology (KO) [BR:cmax00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cmax03009]
    111481594
   03012 Translation factors [BR:cmax03012]
    111481594
Enzymes [BR:cmax01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     111481594
    5.6.2.5  RNA 5'-3' helicase
     111481594
Ribosome biogenesis [BR:cmax03009]
 Eukaryotic type
  Other ribosome biogenesis factors
   111481594
Translation factors [BR:cmax03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    111481594
SSDB
Motif
Pfam: AAA_11 AAA_12 SMUBP-2_HCS1_1B AAA_19 AAA_30 Viral_helicase1 DEAD AAA_22 nSTAND3 AAA_16 AAA ResIII AAA_25 RuvB_N UvrD_C_2 UvrD-helicase PhoH ATPase T2SSE PIF1 DUF2786 ABC_tran AAA_7 IstB_IS21 SRP54 Zot AAA_33 TPK_catalytic Glycos_transf_2 AAA_5 Glyco_tranf_2_3 TsaE
Other DBs
NCBI-GeneID: 111481594
NCBI-ProteinID: XP_022982878
UniProt: A0A6J1J668
Position
Unknown
AA seq 647 aa
MEGSKTKKKSAPITLEQFVSITAPLLDIEKDAEISASISSGASRNLETAQKKGSTILNLK
CIDASSGLMGKTLLEFQSNKGDVLPPHKFSTHDVVVLKPNKADLGSPSLGQGVVYRLKDS
SITVAFDDIPEEGLSSPLRLEKVANEVTYRRMKDALIQLSKGVHRGPAADLIPVLFGERQ
PSMSKTDVKFKPFNSNLDHSQKDAISKALSAKNVFLLHGPPGTGKTTTVVEIILQEVKRG
SKILACAASNIAVDNIVERLVPHRVKLVRLGHPARLLPQVLESALDAQVLRGDNSSLAND
IRKEMKALNGKLLKAKDRNTRRDIQKELRTLSKEERNRQQLAVTDVIKNSDVVLTTLTGA
FSRKLNNISFDLVIIDEAAQALEIACWIALLKASRCILAGDHLQLPPTIQSVEAEKKGLG
RTLFERLADMYGNEVTSMLTVQYRMHELIMDWSSKELYDSKIKAHSSVAAHTLYDLEDVK
KTSSTEPTILLIDTAGCEMEERKDEEESTLNEGEAEVAMAHAKRLIQSGVQPSEIGIITP
YAAQVVLLKMLRSKEDRLKSIEISTVDGFQGREKEAIVISMVRSNSKKEVGFLSDRRRMN
VAVTRARRQCCLVCDTDTVTHDAFLKRLIEYFEENGEYLSASEYQNE
NT seq 1944 nt   +upstreamnt  +downstreamnt
atggagggaagcaaaaccaagaagaaatcagctcctatcactctggagcaattcgtttcc
atcacggccccactcttagacatcgaaaaggatgcagaaatatctgcgtctatcagctcc
ggtgcatccaggaacttggagaccgctcagaaaaagggttctactattctcaacttgaag
tgtattgatgcttcgagtgggctcatgggaaaaactcttcttgagtttcaatcaaacaag
ggagacgttcttcctccccacaagtttagcacacatgatgtggtagttttgaaaccaaac
aaagctgatttaggttctccttctcttggtcaaggagtagtttatcggttgaaggactca
tcgattactgttgcttttgatgacatcccagaagagggtttatccagtcctctacggttg
gagaaagtggcaaacgaggtgacatatcgtaggatgaaggatgccctgatacaattgagc
aaaggggtacatagaggaccggctgctgatcttattcctgtattatttggagagaggcaa
ccatcaatgtccaaaactgatgttaaattcaaacccttcaattccaatcttgatcactct
cagaaagatgccatctcaaaggccctatcagcaaaaaatgtatttctgctgcatggtccc
ccaggaaccggaaaaaccacaacagtggtggaaattatcttacaagaagtaaagcgtgga
tcaaaaattctagcatgtgctgcttcaaatattgctgtcgacaacattgttgagagactt
gttcctcacagagtaaagttggtgagactgggtcatcctgctcgtctacttcctcaagtc
ttggagagtgctctagatgcccaggtcttgcgtggggacaatagttctcttgcaaatgat
atccggaaagagatgaaggcattgaatgggaagcttctgaaagccaaggaccgaaacaca
cggagagacatccagaaggagcttagaacattgtcaaaggaagagcggaataggcagcag
ttagcagtaacagatgtaataaaaaattcagatgttgttctaacaactttgacaggggca
ttttctcgcaaactgaataatatttcatttgatttggtaataattgatgaagctgcccaa
gctcttgaaattgcatgctggatagctctgttgaaggcatcaagatgcattcttgccgga
gaccatcttcagcttcctccaacaatccaaagtgttgaagcagagaagaagggacttgga
agaaccctatttgaacgcctggctgacatgtatggaaatgaagtaacctctatgctcacc
gtccagtatcgtatgcatgaacttatcatggattggtcatcaaaagagctatatgatagt
aagatcaaagctcattcaagtgttgctgcacatacgctttatgatcttgaggatgtgaaa
aagacatcatcaactgaacctaccattctgctcatagacacagcagggtgtgaaatggaa
gaaaggaaggacgaggaagaaagcactttaaatgaaggtgaagctgaggttgccatggcg
catgcaaagagactaatccaaagtggcgttcaaccttctgaaattggaattataactcct
tatgctgcacaggttgtgttactgaaaatgttaagaagcaaagaagacagacttaaaagc
attgaaatctccacagttgatggcttccagggaagagagaaggaagctatcgtcatctcc
atggttcgatcaaattcaaagaaggaggtaggattcttgagcgaccgtagacgaatgaat
gtagctgtgactcgagctagaaggcaatgttgtctggtctgcgacaccgatacggtgact
cacgatgcatttttgaagcgattaatcgaatattttgaagaaaatggtgagtatcttagt
gcctctgagtatcagaatgagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (32)   
   Pfam (32)   
All databases (46)   

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