KEGG   Gallus gallus (chicken): 415875
Entry
415875            CDS       T01006                                 
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
  KO
K12815  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]
Organism
gga  Gallus gallus (chicken)
Pathway
gga03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gga00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    415875 (DHX38)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gga03041]
    415875 (DHX38)
Enzymes [BR:gga01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     415875 (DHX38)
Spliceosome [BR:gga03041]
 Complex C
  Other components
   Step II factors
    415875 (DHX38)
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C DEAD HA2_N AAA_22 AAA_19 Flavi_DEAD nSTAND3 T2SSE SLFN-g3_helicase PhoH SRP54 Microtub_bd AAA_16 AAA_30 AAA_7
Other DBs
NCBI-GeneID: 415875
NCBI-ProteinID: NP_001025753
CGNC: 504
Ensembl: ENSGALG00000000787
UniProt: Q5ZLE8
Position
11:complement(19707224..19717742)
AA seq 1230 aa
MTEAGEASLHRLAGTGPEAEAGGLVPRARSAVPEQHVFKAPAPRASLLGLDVLAAQKRRE
REEEGTSGKRSRVSSYRDWEEGRDEAGSPDEEEDEEEDRSGRSTRKDRHYRSVHVETPSY
TGGVSEEFWERSRQRERERREHGVFASSKEKERKKEHSRDRGHDRKRDREDWDRSRHSSR
SERDGSLERNSRRSEPESPKHRPKDAATPSRSSWEEEDSSYSSSRRSQWESPSPTPSYRD
SERSHRASRDIDRRDRDRSVRSRYSDKTPLPTPSYKYNEWADDRKHLGSTPRLSRGRGRR
EDGEEGIAFETEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSDEYVKKREQHLHK
QKQKRISAQRRQINEDNERWETNRMLTSGVVHRIEVDEDFEEDNSAKVHLLVHNLVPPFL
DGRIVFTKQPEPVIPVKDATSDLAIIARKGSQLVRKHREQKERKRAQHKHWELAGTKLGD
IMGIKKEEEKDEMVTEDGKVDYRTEQKFAEHMKEKSEARSEFAKKKSILEQRQYLPIFAV
QQELLSILRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRV
SEEMGVRLGEEVGYAIRFEDCTSENTIIKYMTDGILLRESLREADLDNYSAIIMDEAHER
SLNTDVLFGLLREVVARRSDLKLVVTSATMDADKFASFFGNVPIFHIPGRTFPVDILFSK
TPQEDYVEAAVKQALQVHLSGAPGDILVFMPGQEDIEVTSEQIVEHLEELEKAPALAVLP
IYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGM
DALQIYPISQANANQRAGRAGRTGPGHCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLL
LKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRQMVEFPLDPALSK
MLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQVREKFAVPESDHLTYLNVYLQ
WKNNNYSTLWCNQHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDVVRKCICAAY
FHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVD
GEWLAELGPMFYSIKHAGKSRQENRRRAKEEASAMEEEMALAEEQLRARREEQERRNPLG
SARCTKIYTPGRKEQGEPLTPRRTPARFGL
NT seq 3693 nt   +upstreamnt  +downstreamnt
atgaccgaggcgggcgaggcgtcgctgcaccggctggctgggaccggccccgaggccgag
gcgggcgggctggtcccgcgggcgcgcagcgccgtccccgagcagcacgtcttcaaggcg
ccggcgccgcgggcatcgctgctgggcctggacgtgttggcggcccagaagcggcgcgag
cgtgaggaggaggggacgagcgggaaacggtcccgggtgtcctcctacagggactgggag
gagggccgcgacgaggcgggcagccccgacgaggaggaggacgaggaggaggatcggagc
ggtcgcagcacccgcaaggacaggcattaccgttctgtccatgtggaaacaccttcctac
acaggtggtgtcagtgaggagttttgggaacgcagccgacagcgggaaagagagcgtcgt
gaacacggtgtctttgcctcctcaaaggagaaggaacggaagaaagagcacagtagggac
cgaggccacgatcgtaaacgggaccgtgaggactgggacagaagtcgtcacagtagcaga
tcagaaagagatggctcgttggagcgaaacagcaggagaagtgaaccagagagtcccaag
catcgtcccaaagatgcagccacgccgtctcgctccagctgggaggaggaggacagcagt
tacagcagttcccgccgctcacaatgggaatctccttcacccacaccttcctatcgagac
tcagagcgcagtcaccgggcatcacgggacatagatcggagagaccgggacaggtctgta
aggagcaggtattcagataagacaccattgcccaccccatcctacaaatataatgagtgg
gctgatgaccggaaacacctggggtccacaccacgactgtccagaggtagagggcggcgt
gaggatggggaggagggcattgcttttgagacggaagaagagcgccagcagtgggaggat
gaccaacggcaagcggaccgggactggtatatgatggatgaaggctacgatgagtttcac
aaccccttggcctactcatctgatgagtacgtgaagaagcgggagcagcacttgcacaag
cagaagcagaagcgtatctctgcacagcggcggcagatcaatgaggataacgagcgctgg
gagacaaatcgcatgctgaccagtggtgtggttcatcggattgaagtggatgaagatttc
gaagaggataactcagccaaagtccatctgctggtgcataacctggtgcctcctttccta
gatgggaggatagtcttcacaaaacagccagagccagtcatccctgtaaaggatgccact
tccgacttggccatcatagcccgaaagggcagccaattggtgcgcaaacacagggagcaa
aaggagcgtaaaagggctcagcataaacactgggagctggcaggcacaaaactgggagac
attatggggatcaagaaggaggaggagaaggatgagatggtgacagaagatggcaaagtg
gattacaggactgagcagaagtttgctgaacacatgaaagaaaaaagtgaagcaaggagt
gagtttgccaagaagaagtcaattctggagcagagacagtatctgcccatctttgctgtg
cagcaggagctgctttccatcctcagggacaacagcattgtgattgtggttggggagaca
gggagtggtaagacaactcagctgacacagtacctccatgaggatggctacacagactat
ggcatgattggctgcacacagccccgcagagtggcggccatgtcggttgccaagcgggtc
agtgaagagatgggagtgcgtctgggagaggaggtgggttatgctatccgctttgaagac
tgcacgtcagagaacacgataatcaaatacatgacagatgggatcctccttcgtgagtcg
ctacgagaggctgacttggacaactacagcgctatcatcatggatgaggcacacgagcgc
tcactcaatactgatgtgctctttggcctgcttcgggaggtggtagcacgacgctcggat
ctgaagcttgttgtcacctctgccaccatggatgctgataaatttgcctctttttttggg
aatgttcccattttccacattcctgggcgcacctttcctgttgatattcttttcagcaag
acaccgcaagaggattatgtggaggctgcagtgaaacaagctctgcaggtccatttgtct
ggtgctcctggagacatccttgtcttcatgcctggtcaggaggatattgaggtgacatca
gaacaaattgtggagcaccttgaggagctggagaaggcacctgcacttgctgtactgcct
atctattctcagctgccatcggacttacaggccaagatcttccagaaggctccagatggg
gtcaggaagtgcattgttgccactaacattgcagagacctcactgacagtggatggtatc
atgtttgttattgactctggatactgcaagttgaaggttttcaatccccgtataggcatg
gatgcactgcagatctaccccatcagtcaagccaatgccaatcagagagctggccgagct
ggccgaacaggcccaggtcactgcttcaggctctacacccagagcgcctacaagaatgag
ctgctgacaaccacagtgcctgaaatccagcgcaccaacctcgccaatgtagtgcttctg
ctcaaatctctgggtgtacaggacctgctgcagttccacttcatggatccacctcctgag
gacaacatgctcaactccatgtaccagttgtggattctgggggccctggataacacaggt
ggtctgacctcaacaggacgtcagatggtggagttcccactggatcctgcgctctccaaa
atgctcattgtttcatgtgacatgggctgcagctctgagatattgctaattgtttccatg
ttgtctgtgcctgccatcttttatcggcctaagggccgagaggaagagagcgaccaagtg
cgggagaaatttgctgtcccagagagtgatcacttaacttacctgaatgtttacctgcag
tggaagaacaacaactactctactctgtggtgcaaccagcacttcattcatgccaaggcc
atgcggaaggtgcgggaggtgcgtgcccagctcaaggacattatggtgcagcagcgcatg
agcctggcatcctgtggtactgactgggatgttgtcaggaagtgtatctgtgctgcgtat
ttccatcaagctgcaaagctgaaaggcattggggagtatgtcaatatccgtacaggcatg
ccttgccacctgcaccccaccagctccctctttggcatgggctacactccagactacatt
gtttatcatgagctggtcatgaccaccaaggaatacatgcagtgtgttactgctgtggat
ggagagtggctggcagagttgggccccatgttctacagtatcaagcatgctggcaagtca
cgtcaggagaaccgccgacgtgcaaaggaggaagcatccgccatggaggaagagatggct
ctggctgaggagcagctgcgtgcccgccgggaggagcaggagcgccgtaacccgttaggc
agtgcaagatgtactaaaatctatacacctggacggaaggagcagggggagcccctgacg
ccacgacgtaccccagcccgctttggcctctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (17)   
   Pfam (17)   
All databases (58)   

Download RDF
DBGET integrated database retrieval system