KEGG   Gossypium hirsutum (upland cotton): 107889542
Entry
107889542         CDS       T04793                                 
Name
(RefSeq) DNA-binding protein SMUBP-2
  KO
K19036  ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3]
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ghi03009]
    107889542
   03012 Translation factors [BR:ghi03012]
    107889542
Enzymes [BR:ghi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     107889542
    5.6.2.5  RNA 5'-3' helicase
     107889542
Ribosome biogenesis [BR:ghi03009]
 Eukaryotic type
  Other ribosome biogenesis factors
   107889542
Translation factors [BR:ghi03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    107889542
SSDB
Motif
Pfam: AAA_11 AAA_12 SMUBP-2_HCS1_1B AAA_30 AAA_19 Viral_helicase1 AAA_22 nSTAND3 AAA_16 PhoH UvrD_C_2 DEAD ResIII UvrD-helicase RuvB_N AAA AAA_25 SLFN-g3_helicase PIF1 Zot AAA_33 IstB_IS21 SRP54 AAA_7 ABC_tran Glyco_tranf_2_3 AAA_5 DUF2786 TsaE
Other DBs
NCBI-GeneID: 107889542
NCBI-ProteinID: XP_016669495
UniProt: A0A1U8HTZ1
Position
A09:complement(70880071..70887295)
AA seq 649 aa
MAMEGEKKKKSSPVSLQQFISNITPLIDLEKEAEISASINSGTTRNLDTAQKRGSTILNL
KCVDAQTGLMGKTLLEFQSTKGDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKD
SSITVAFDDVPEDGLNNPLRLEKVANEVTYRRMKDALIQLSKGVLKGPAADLVPVLFGER
QPTVSKKGTVTFTPFNKNLDHSQRDAILKALSSKDVFLLHGPPGTGKTTTVVEIVLQEVK
RGSKILACAASNIAVDNIVERLATHRVKMVRLGHPARLLPQVLDSALDAKVLRGDNSSLA
NDIRKEMKVLNGKLLKTKDRNTRREIQKELRTLSKEERKRQQLAVTDVIKDADVILTTLT
GAFSRKLDNTTFDLIIIDEAAQALEIACWMALLKGSRCILAGDHLQLPPTIQSVEAERKG
LGRTLFERLADLYGDEVMSMLTVQYRMHELIMNWSSKELYSSKIKAHSSVATHMLFDLEN
VKKSTSTEPTLLIIDTTGCDMEEKKDEEESTLNEGEAEVAISHAKRLIHAGVHASDIGII
TPYAAQVVLLKMLKSNEYKLKNVEISTVDGFQGREKEAVIISMVRSNSKKEVGFLSDRRR
MNVAVTRARRQCCLVCDTETVSSDGFLKRLVEYFEEHGEYLSASEYCNE
NT seq 1950 nt   +upstreamnt  +downstreamnt
atggcgatggagggagaaaagaagaaaaaatcatctccagtttctcttcaacaattcata
tccaatatcacccctttaattgatttggaaaaggaagctgagatatcagcctcaataaat
tcaggaacaacaagaaatttggatactgctcaaaagaggggctccacgattctaaatttg
aagtgtgttgacgctcagacagggcttatggggaaaactctacttgagttccaatcgacc
aaaggagatgttcttcctgctcacaagtttggaacccatgatgtagttgtcctaaaaccg
aacaaggctgatttaggttctcctgctcttggacaaggtgtagtttaccggttgaaggat
tcctcaatcacagttgcttttgatgatgtacctgaagatggtttaaataatcctttgcgt
cttgaaaaagtggcaaatgaggtgacatatcgtaggatgaaggatgccctgatacaactg
agtaaaggtgtgctgaagggtccagctgcagatctagttcctgtattgtttggagagaga
cagccaacagtctcaaagaagggcactgtcacattcaccccatttaacaaaaaccttgat
cactctcagagagatgccattttaaaggcactgtcatcaaaggatgtatttttgctgcat
ggacctcctggaaccggaaaaactacaacagtcgtggaaattgtactacaagaagtgaag
cgaggatcaaagatacttgcttgtgctgcttcaaatattgctgttgacaacattgttgag
cgacttgccactcacagagtaaagatggtcagattggggcatcctgctcgattattacct
caagttttggacagtgctcttgatgcaaaggtactacgaggagataatagctctcttgca
aatgacattagaaaggaaatgaaggtactaaatgggaaattattgaaaaccaaagacaga
aatacaaggagagagatccagaaggagcttagaactctttcaaaagaagagcgtaaaagg
cagcagcttgctgttactgatgtaattaaggatgcagatgtcatattgacaactttgact
ggtgcattttctcgcaaactggacaacactacatttgatttgattattatcgatgaagct
gcacaggctcttgaaatagcatgctggatggctctactaaagggctcaagatgtatactt
gcaggggaccatctgcagcttcctccaactatccagagtgttgaagctgagaggaaaggg
ttaggaagaaccctttttgaacgccttgcagatctgtatggagatgaggtcatgtccatg
ctcactgtccagtaccgcatgcatgagcttattatgaactggtcatctaaagagctttac
agcagcaagatcaaagcgcattctagtgttgctacgcacatgctttttgatctcgagaat
gttaagaagtcaacttcaacagaaccaacccttcttatcatagacacaactgggtgtgat
atggaagagaagaaggatgaggaagagagcacattgaatgaaggtgaagctgaggtagct
atttcacatgcaaagagacttattcatgctggagtccatgcttctgatattggaattatt
accccttatgctgcgcaggtggtcttattgaagatgttgaaaagcaatgaatataagcta
aagaatgttgaaatctcaactgttgatggtttccaaggtcgagagaaggaagcagttatc
atttcaatggttcggtcaaactcaaagaaagaggttgggtttttaagtgaccgaaggcga
atgaatgtggctgtgacacgagcaagaagacagtgttgtcttgtatgtgacactgaaaca
gttagcagcgatgggttcttaaagcgattggttgagtattttgaggagcatggtgagtat
ttaagtgcctctgagtattgtaatgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (29)   
   Pfam (29)   
All databases (45)   

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