KEGG   Halorhabdus sp. CBA1104: Hrd1104_12940
Entry
Hrd1104_12940     CDS       T06289                                 
Name
(GenBank) ATP-dependent DNA helicase
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
hala  Halorhabdus sp. CBA1104
Pathway
hala03022  Basal transcription factors
hala03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hala00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    Hrd1104_12940
  09124 Replication and repair
   03420 Nucleotide excision repair
    Hrd1104_12940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hala03021]
    Hrd1104_12940
   03400 DNA repair and recombination proteins [BR:hala03400]
    Hrd1104_12940
Enzymes [BR:hala01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     Hrd1104_12940
Transcription machinery [BR:hala03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     Hrd1104_12940
DNA repair and recombination proteins [BR:hala03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     Hrd1104_12940
SSDB
Motif
Pfam: Helicase_C_2 DEAD_2 DEAD ResIII ATPase SLFN-g3_helicase Zot Sigma54_activat nSTAND3 AAA_34 SecA_DEAD TrwB_AAD_bind PhoH Glyoxalase AAA_7 AAA_16
Other DBs
NCBI-ProteinID: QGN08282
UniProt: A0A650A769
Position
2591391..2593568
AA seq 725 aa
MPDDDPDSPYERFFPYDEPYDHQREAIEGIAEALEDASDVLLEGATGTGKTLAALTPALE
HARRTDKTVVITTNVHQQMRQFTAEARAINHQESIRAIVFRGKASMCHIDVGYEECQALR
DTTHDLVDAESERADLERRQRDLLEESQAGDGDAAEARSAIMDELESVGEELQTLREEQS
TCEHYYHNLTSDTDDFYAWLYDDVRTPDEVYEYAERQGFCGYELLKDGIEGVDLVICNYH
HLLDPFVREQFFRWLGRDPSDVIAVFDEAHNVADAARDHARRTLAEPTLERALDELDGSD
DPRADAARNVLTTIHTALQETYEDALAFGQRETIEDDWEDLAIDNDDRRDDLTLSLLQHY
TGQGVSDDLASALKLGQALDQQYEDAFKDGETSVRKECPTLQAATFFEAWLAESDESGLY
PVVSVRRDDDNGDLYGRAELYTAIPQRVTSGLFEDLYATVLMSATLRPFDVTEDVLGLED
PVTMAYGPQFPAERRRTYAVDVPALFASRRDEPELQDTVAGVIEDAARMTPGNTLAFFPS
YAEAERYHDRVNIEGTRYLDEPGTRAQELRETFTADDDGVLFTSLWGTLAEGVSFDGDDA
RTVLVVGVPYPYLDERMDAVQAAYETAFDGEDAGWRYAVEIPTVRKTRQAMGRVIRSPED
FGARVLIDRRYTEDAEIQMPEYAVRGTFPPAERSEMIDVDPGKLKFGLLNFYADVEAYDG
DPPAP
NT seq 2178 nt   +upstreamnt  +downstreamnt
atcccggacgacgatccagactccccatacgagcggtttttcccctacgacgagccatac
gaccaccagcgcgaggccatcgagggaatcgccgaagcactcgaagatgcatcggacgta
ctgctcgaaggggccacggggacgggcaagacgctggcggcgctgacgcccgcactggaa
cacgctcgccgaaccgacaagacggtcgtcatcacgaccaacgtccaccagcagatgcgc
cagttcaccgcggaggcccgggcgatcaaccaccaggagtccatccgggcgatcgtcttc
cgcgggaaggcttcgatgtgtcacatcgacgtgggctacgaggagtgtcaggcgttgcgg
gatacgactcacgatctcgtcgacgccgagagcgaacgggccgacctcgaacgccgtcag
cgcgacctcttagaagagagccaggcaggcgacggcgacgcggccgaggctcgctcggca
atcatggacgaactcgagagcgtcggcgaagaactccaaaccctgcgcgaagagcaatcg
acctgtgaacactactaccacaatctcacgagcgatactgacgacttctacgcgtggctg
tacgacgacgttcggacgccggacgaggtttacgagtacgccgagcggcagggcttttgc
ggatacgaactcctgaaagacggcatcgagggcgtcgatctggtgatctgcaactaccac
cacctgctggacccgttcgttcgcgagcagttcttccgctggctgggccgggacccgagt
gacgtgatcgcagtcttcgacgaggctcacaacgtcgctgacgccgcccgcgatcacgcc
cgccggacgctggccgaacccacgctcgaacgcgctctcgacgaactcgacggaagtgac
gatccacgggccgatgccgcgcggaacgtcctgacgacgatccacacggccctccaggaa
acctacgaagacgccctggcattcggccaacgggagacgatcgaggacgactgggaggac
ctcgcgatcgacaacgacgaccgccgggacgatctcaccctgtcgctcctccagcactac
acgggccagggggtcagcgacgacttagcgagtgcactcaaactcgggcaggccctcgac
cagcagtacgaagacgccttcaaggacggcgagacgagcgtccgcaaggagtgtccgacc
ctccaggcggcgacgttcttcgaggcctggctggccgagagcgacgagtcggggctctat
ccggtggtgagcgtccgccgagacgacgataacggcgatctgtacggccgggcggaactg
tacacggccatccctcagcgcgtcaccagcgggctgttcgaggatctctacgcgaccgtg
ttgatgagtgcaaccctccgtccgttcgacgtgaccgaggacgtgttgggactcgaggac
ccggtgacgatggcctacggcccacagttccccgcggagcgccgacgcacctacgcggtc
gacgtccccgcgctgtttgccagccggcgtgacgaacccgaactccaggatactgtcgcg
ggtgtcatcgaggacgccgcccggatgacaccgggcaacaccctcgcttttttcccgagt
tacgccgaggccgagcggtatcacgaccgtgtgaatatcgaggggacccgctacctcgac
gaacccggcacccgcgcccaggagttacgggagacgttcaccgctgacgacgacggtgtg
ctgttcacctcgctgtgggggacgctggctgagggcgtcagtttcgacggcgacgacgcc
cggacggtcctggtcgtcggcgtgccttatccctatctcgacgagcgcatggacgccgtc
caggcggcctacgagacggccttcgacggcgaggatgccgggtggcgctacgccgtcgag
attcccaccgttcgcaagacgcgtcaggcgatggggcgggtgatccgctcgcccgaggac
ttcggggcgcgggtactgatcgaccggcgatacaccgaagacgcggagatccagatgccc
gagtacgccgtccgtggcacgtttccaccggccgaacggagcgagatgatcgacgtcgac
cccggcaagctcaagttcggattgctgaacttctatgccgacgtcgaggcttacgacggc
gatccgcccgccccttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (27)   

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