KEGG   Haloferax mediterranei: HFX_0822
Entry
HFX_0822          CDS       T02129                                 
Symbol
rad50
Name
(GenBank) chromosome segregation protein
  KO
K03546  DNA repair protein SbcC/Rad50
Organism
hme  Haloferax mediterranei
Brite
KEGG Orthology (KO) [BR:hme00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hme03400]
    HFX_0822 (rad50)
DNA repair and recombination proteins [BR:hme03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     HFX_0822 (rad50)
    Archaeal homologous recombinant proteins
     HFX_0822 (rad50)
SSDB
Motif
Pfam: AAA_23 SMC_N AAA_15 AAA_21 AAA_27 AAA_29 Baculo_PEP_C AAA_13 ATG14 Spike_torovirin Phage_GP20 DUF16 ABC_tran SlyX ZnF_RZ-type DUF1664 DUF3584 FapA
Other DBs
NCBI-ProteinID: AFK18544
UniProt: I3R2T4
Position
774956..777637
AA seq 893 aa
MRFTHISIQNFKPYEDAELDLRDGVTVIHGVNGSGKSSLLEACFFALYGSKALAGTLDDV
VTTGADDAEISLEFVHDGGEYRIDRRIRISGDRATTAKCVLEGPDGSVEGARDVRRHVGS
LLRMDAEAFVNCAYVQQGEVNKLINATPAQRQDMIDDLLQLGKLEQYRERAGNARLGVED
VLTSKQSVLEDIESQIAAKEDEDLHARLNALESDLVEVDEKIEHYESQRDKAKSALDAAQ
STLDEHAENRERLAEVESAIEDLKSKVAADEAERDKLTERIRELGEELDDLDEDIETVLE
QTALDDASEEAIAARREAFADRESEIRDELSEARTRAQGLATQAERLEERADDLETRAEE
KREAAEADEQTADEAASELESFRETSADIEASLETIEASFADAPVELGEAADLLDERRSD
LSSARESLAETETELKNARERLAEAEELRDAGKCPECGQPVDGSPHVDAISEREGAVERL
ESERETLESKVESLKEAVEAAEKLVDAESRADSYTDRLELAAERIADREETVETRREAAT
EKREAADDLESEAEEKREAATKQAERAAEVEETVESLESDLESLDARRERLDRVESLVDT
RADTVDARDRLREKRETLADVNRERREHLQERQKRRDELRETVDEDAVKKAKTSKQKAET
YLEKVEDEVLPDLREQRDDLQSQIGGVNADLERLDELRERREELAERVDALESLHDEVST
LESTYGDLRAELRQRNVEVLERMLNETFDLVYANDAYSRIRLDGEYGLTVFQKDGTALEP
EQLSGGERALFNLSLRCAIYRLLAEGIDGAAPLPPLILDEPTVFLDTGHVSRLVDLVEDM
QNRGVKQILIVSHDDELVGAADDLVRVEKNPTTNRSTVERTDAPTLASALADD
NT seq 2682 nt   +upstreamnt  +downstreamnt
atgagattcacgcacatcagcattcagaacttcaagccgtacgaggacgccgaactcgac
cttcgcgacggcgtcacggtcatccacggcgtcaacgggagcgggaagtcgtcgctcctc
gaagcgtgtttcttcgccctctacgggtcgaaagcgctggctgggacgctcgacgacgtg
gtgacgaccggcgctgacgacgccgaaatctcgctcgaattcgtccacgacggcggcgag
tatcgtatcgaccgccgaatcaggatttcgggcgaccgcgcgaccaccgcgaagtgtgtt
ctcgaaggaccggacgggtccgtcgagggcgcgcgcgacgttcgacggcacgtcgggtcg
ctcctgcggatggacgccgaggcgttcgtcaactgcgcgtacgtccagcagggcgaggtc
aacaaactcatcaacgcgacgccggcacagcgtcaggacatgattgacgacctcctgcaa
ctcgggaaactcgaacagtaccgagaacgggccggaaacgcccggttgggggtcgaagac
gtactgacgagcaagcagagcgtcctcgaagatatcgagtcgcaaatcgcggccaaggag
gacgaagacctccacgcgcgactcaacgccctcgaatcggacctcgtcgaggtagacgag
aaaatcgagcactacgagtctcaacgagacaaagctaaatcggcccttgacgccgcccaa
tcgacgctggacgaacacgcagaaaatcgggagcgactcgccgaagtcgaatccgccatc
gaggacctcaaatcgaaagtcgcggccgacgaagcagagcgcgacaaactcacggagcga
atccgggaactcggtgaggaactcgacgacctcgacgaggacatcgaaaccgtgctggag
caaaccgcactcgacgatgccagcgaggaggcaatcgccgcccgtcgggaggcgttcgcc
gaccgggagtcggagattcgagacgaactttcggaagcccggacgcgggcgcaaggactc
gccacgcaggcagaacggctcgaagagcgcgcagacgacctcgaaactcgcgccgaggag
aaacgcgaggccgccgaagcggacgaacaaacggccgatgaggcagcgagcgaactcgaa
tcgttccgcgagaccagcgcagacatcgaagcctcgctcgaaaccatcgaagcgtcgttc
gctgacgcgcccgtcgaactcggcgaggcggccgaccttctcgacgaacgccggagcgac
ctctcttcggcccgcgagtcacttgccgaaaccgagaccgagttgaagaacgcccgcgaa
cgactcgccgaagccgaggaactccgcgacgcgggcaagtgtccggagtgtggccaaccg
gtcgatggctccccccacgtggacgccatcagcgaacgcgagggggcggtcgagagactc
gaatccgagcgagagacgctcgaatcgaaggtcgagtcactgaaagaagcggtcgaagcg
gctgagaaactagtcgacgccgaaagccgcgccgactcctacacagaccggctcgaactt
gccgccgaacgaatcgccgaccgcgaggagacggtcgaaactcgacgtgaggcagctacg
gagaaacgtgaagccgcagacgacctcgaatcggaggccgaagaaaagcgcgaggcggcg
acgaaacaggccgagcgcgcggcggaagtcgaggagacggtcgagtccctcgaatcggac
ctcgaatcgctcgatgctcgccgagagcgactggaccgcgttgaatctctcgttgacacg
cgagcggacacggtcgatgcccgcgaccgcctccgagagaagcgcgagacgcttgcggac
gtaaaccgcgagcgacgtgaacacctccaagagcgccagaagcgacgtgacgaactccgc
gagacggtcgacgaagatgcggtcaagaaggccaaaacgagcaaacagaaggccgaaacg
tacctcgaaaaggtcgaagacgaagtgctcccagacttgcgggagcaacgcgacgacctc
cagagccaaatcggtggcgtcaacgccgacctcgaacgactcgacgaactccgcgagcgc
cgcgaagaactcgctgagcgcgtggatgccctcgaatcgctccacgacgaggtctcgacg
ctcgaatcgacctacggcgacctccgggcggaactccgccagcggaacgtcgaagtgctc
gaacggatgctcaacgagacgttcgacctcgtgtacgccaacgacgcctactcgcgcatc
cgactcgacggcgagtacggcctgacggtgttccaaaaagacggcacggcgctcgaaccc
gagcagttgtcgggtggcgaacgcgccctgttcaacctcagcctgcgatgtgccatctat
cggcttctcgccgagggtatcgacggcgcggccccgctcccgccgctcattctcgacgaa
ccgaccgtcttcctcgacaccggccacgtctcacgactggtcgacctcgtcgaggacatg
cagaaccgcggcgtcaagcagattctcatcgtcagccacgacgacgaacttgtcggcgcg
gccgacgacctcgtccgcgtcgagaagaacccgacgacgaaccgctcgactgtcgagcgg
accgacgccccgacgctcgccagcgcgctcgcggacgactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (18)   
   Pfam (18)   
All databases (25)   

Download RDF
DBGET integrated database retrieval system