KEGG   Lonchura striata domestica (Bengalese finch): 110472351
Entry
110472351         CDS       T05897                                 
Name
(RefSeq) DNA dC->dU-editing enzyme APOBEC-3F
  KO
K16932  C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
Organism
lsr  Lonchura striata domestica (Bengalese finch)
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsr03019]
    110472351
Enzymes [BR:lsr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.36  mRNA(cytosine6666) deaminase
     110472351
Messenger RNA biogenesis [BR:lsr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    APOBEC1-ACF complex
     110472351
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     110472351
SSDB
Motif
Pfam: SNAD4 APOBEC4_like NAD1 APOBEC1 APOBEC2 APOBEC_N NAD2 APOBEC4 APOBEC3 APOBEC_C dCMP_cyt_deam_1 Toxin-deaminase
Other DBs
NCBI-GeneID: 110472351
NCBI-ProteinID: XP_031362134
Position
1:complement(86495403..86513036)
AA seq 371 aa
MYRRKMRGMYISKRALRKHFDPRNYPRETYLLCELQWRGSHKSWQHWLRNDDSKDCHAEK
YFLEEIFEPRSYNICDMTWYLSWSPCGECCDIIQDFLEEQPNVNINIRIARLYYADRASN
RRGLMELANSPGVSIEIMDADDYNDCWETFIQPGVYYRFSPENFESAIRRNCSQLEDILQ
IQPRDFQRNYWPRQNGRVVYLLYEIRWRRGSIWRNWCLNNHEQHAEVNFLENHFNDRPQT
PCSITWFLSTSPCGKCSRRILDFLRSHPNVTLVIYAAKLFRHHDIRNRQGLRNLKMNGVT
IRIMNLEDYRYCWRNFVAYQAGEDDYCPQNVTVYFLLNCTELFRIFLVSRHLKKTPRAKI
NAKNPRKRRFE
NT seq 1116 nt   +upstreamnt  +downstreamnt
atgtacaggagaaagatgagaggcatgtatatatctaagagggcattaagaaaacacttt
gatccccgcaattatccacgcgagacatacctactctgcgagctgcagtggcgtgggagt
cacaagtcttggcaacactggctcagaaatgatgatagtaaagattgccatgcggaaaag
tacttcctggaggaaatctttgagccaagaagctacaatatctgtgacatgacctggtac
ctgtcctggagcccctgtggggagtgctgcgatataatacaggatttcctggaggagcag
cccaatgtgaacataaacatacgcatagcacggctctactacgcagaccgtgcaagcaac
cgcagaggcctgatggagcttgccaactcgccaggagtaagcattgaaatcatggatgcc
gacgactataatgactgttgggagacctttatacaaccaggtgtctactatcgtttctca
cccgagaactttgaatcagcaataaggaggaattgctcacagctggaagatatccttcag
atacagccaagagacttccaaaggaattattggcccagacaaaatggacgggtggtgtac
ctgctgtatgaaatcaggtggagaagaggttccatctggaggaactggtgcttgaacaac
cacgaacaacatgctgaagtcaacttcctggaaaatcatttcaatgacaggccacaaact
ccttgctccatcacctggttcctttcaactagtccctgtggaaagtgctccagaaggatt
ctggatttcctgaggtcgcaccctaatgtgaccttggtaatatatgcagccaagctgttc
aggcaccacgatatccgcaaccgacaaggcctccgcaacctgaaaatgaacggagtcacc
atccgtatcatgaatcttgaagattacaggtactgctggagaaattttgttgcataccaa
gctggagaagatgattattgtccccagaacgtcactgtatacttccttcttaattgcaca
gaactctttcgtatatttttggtaagtagacacctgaagaaaacacctagagcaaaaata
aatgcaaaaaatccaaggaaaaggagatttgaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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