KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4327645
Entry
4327645           CDS       T01015                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14 isoform X2
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4327645
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:osa03041]
    4327645
   03009 Ribosome biogenesis [BR:osa03009]
    4327645
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     4327645
Spliceosome [BR:osa03041]
 Complex A
  U1 snRNP components
   U1 related factors
    4327645
 Complex B
    4327645
Ribosome biogenesis [BR:osa03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    4327645
SSDB
Motif
Pfam: DEAD Helicase_C ResIII WW ERCC3_RAD25_C SWI2_SNF2 PepSY_TM
Other DBs
NCBI-GeneID: 4327645
NCBI-ProteinID: XP_015621421
UniProt: Q5VQL1 B9ET41 A0A8J8Y3D2
Position
1:complement(3713724..3718632)
AA seq 708 aa
MASAAAAAATARGPRYAPPDPTLPKPWRGLIDGNTGYLYFWNPETKAVQYDRPTAPPPSS
PPAQQPPERPRNSDPAESQAQAGASRTQNAAPADDRARNDHLNDHFERRTEAAGSHAQNV
PFTEQNTRSNPSSQPCSAAGVYPAQNVFSEAASGDRTSPEAYRAKHEITIVGNEAPAPFM
TFQSTGFPPEILREVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFI
LLKRLQHNSRDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLE
RGADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQT
LMFTATWPKEVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILR
SQEPGSKIIIFCSTKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVA
TDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLV
KILEGANQSVSQQLRDMVSRGGYGGRSRRWASSDDSYGGRGYDSGYTSRSTDNYNSGYGS
QSGNGSSFHSSFHNSNSGNQFGDTSGFQTSFHNSSSNNQTSDNPSFHASSNNDQPGDGLS
FHARFYSSSRGSDQSRTNNAGFRDRSRSPPSNRNHEDPGSKAVGVSNW
NT seq 2127 nt   +upstreamnt  +downstreamnt
atggcgtcggcggcggcggcggcggcgacggcgagggggccgcggtacgcgccgccagat
ccgacgctgcccaagccgtggagggggctcatcgacggcaacaccgggtacctctacttc
tggaacccggagaccaaggccgtgcagtacgaccgccccacggcgccgccgccctcctcc
cccccggcgcagcagcctccggagaggcctaggaacagcgatcctgctgagtcgcaggcg
caggctggagcgagccgaacgcagaatgctgctcctgctgatgatagggcaaggaatgat
catttgaatgatcatttcgagcggcgcacggaagcggcgggaagtcatgcgcagaacgtg
cctttcactgagcaaaatactaggagcaacccttcttcgcagccgtgctctgcagctgga
gtataccctgcacagaatgtattttcagaggctgccagtggagaccgcacctcaccagaa
gcgtatcgtgctaagcacgagatcactattgtcggaaatgaggctccagctccattcatg
acatttcagtccacaggtttccctccagagattctaagggaggtacagcaagcgggattc
tctgcaccaactcctatccaagctcaatcatggccaattgctcttaggaatcgtgatatt
gtagctgtggcgaagacaggttccggaaaaacactgggttatctcattccagggtttatc
cttcttaagcgccttcaacataattcaagggatggtccaacggtattagtgctttctcca
acaagggaattggcaacacaaatccaagatgaagcgaaaaagtttgggagatcgtcaaga
atatcgtctgtttgtttatatggaggtgctcctaaaggtcctcagctaagagatctagag
cgtggtgcagacattgtggttgcaactcctggaagattgaatgacattttagaaatgcga
agagtgagcctacatcaagtatcttatcttgttcttgatgaggctgaccgcatgcttgat
atgggttttgagccacaaataagaaaaattgtgaaacaagtacaacccaaacgacagact
cttatgttcactgccacttggccaaaagaggtgaggaaaatagcctcagatttgctgtcc
aatccagtccaagttaacattgggaacactgatcaactggttgccaataagtcaatcact
cagtatgtggatgttatcacacctccggagaaatcgaggcggcttgatcaaatcctaagg
tcacaggaacctggatcgaaaatcataatattttgctccacaaagaggatgtgtgatcag
ctggctcgaaacctagcacggcagtatggtgcttctgctattcatggtgataaatcacaa
gccgagagggattctgtgttgagtgaatttcgaagtggcagatgccctattcttgttgct
actgatgtggctgcccgaggcttggacataaaggatatcagagttgtggtcaactacgat
ttcccaacaggtgttgaggattacgtccatagaattgggagaacaggacgggctggagcg
actggagttgcctatacattcttctgtgatcaggattcaaagtatgcttcagatctcgtg
aagattttggagggtgcaaaccagtctgtttcgcaacagttgagagatatggtctcccgt
ggagggtatggtggaaggtcacggcgctgggcatcttcagatgactcttatggtggtcga
ggatatgattcaggctatacttcaaggtcgactgacaactataacagtggttatggcagt
cagtctgggaatggttctagctttcatagtagcttccataacagcaacagtggcaatcag
tttggcgatacttctggcttccaaaccagctttcataacagcagcagcaacaatcaaacc
agtgacaatccaagctttcatgccagcagcaacaacgatcaacctggtgatggtctcagc
tttcatgccaggttctatagctcttctcgaggcagcgatcagagcagaacaaacaatgct
ggctttcgtgatagaagtaggagtcctccaagcaatcgcaaccatgaagatcctgggtcc
aaggctgttggtgtctccaactggtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (50)   
   KEGG ORTHOLOGY (1)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (11)   
   UniProt (3)   
   SWISS-PROT (1)   
   RefSeq(pep) (7)   
DNA sequence (21)   
   RefSeq(nuc) (7)   
   GenBank (7)   
   EMBL (7)   
Protein domain (7)   
   Pfam (7)   
All databases (96)   

Download RDF
DBGET integrated database retrieval system