KEGG   PATHWAY: lbz03018
Entry
lbz03018                    Pathway                                
Name
RNA degradation - Leishmania braziliensis
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
lbz03018  RNA degradation
lbz03018

Other DBs
GO: 0006401
Organism
Leishmania braziliensis [GN:lbz]
Gene
LBRM_23_1670  putative Csl4p homologue [KO:K07573]
LBRM_14_0010  putative exosome complex exonuclease [KO:K03679]
LBRM_04_0170  putative exosome complex exonuclease RRP40 [KO:K03681]
LBRM_35_5140  putative exosome-associated protein 4 [KO:K12587]
LBRM_35_3240  putative exosome complex exonuclease rrp41 [KO:K11600]
LBRM_22_1490  putative exosome complex exonuclease RRP45 homolog [KO:K03678]
LBRM_28_0340  putative rrp44p homologue [KO:K12585] [EC:3.1.13.-]
LBRM_20_2660  putative exosome subunit rrp6p homologue [KO:K12591] [EC:3.1.13.-]
LBRM_35_3220  putative ATP-dependent RNA helicase [KO:K12598] [EC:5.6.2.6]
LBRM_21_0890  conserved hypothetical protein [KO:K12604]
LBRM_25_1400  conserved hypothetical protein [KO:K12580]
LBRM_22_1540  putative CCR4 associated factor [KO:K12581]
LBRM_20_4010  cell differentiation protein-like protein [KO:K12606]
LBRM_30_1450  putative ABC transporter [KO:K12608]
LBRM_35_6680  conserved hypothetical protein [KO:K01148] [EC:3.1.13.4]
LBRM_34_4980  PABP1; putative polyadenylate-binding protein 1 [KO:K13126]
LBRM_25_0080  PABP3; putative poly(A)-binding protein 3 [KO:K13126]
LBRM_30_0260  putative ubiquitin hydrolase [KO:K12571] [EC:3.1.13.4]
LBRM_32_0810  conserved hypothetical protein [KO:K12572]
LBRM_06_0240  putative 5'-3' exonuclease [KO:K12618] [EC:3.1.13.-]
LBRM_35_1980  putative exoribonuclease 2 [KO:K12619] [EC:3.1.13.-]
LBRM_23_0600  putative 5'-3' exonuclease XRNC [KO:K12619] [EC:3.1.13.-]
LBRM_32_0800  U6 snRNA-associated Sm-like protein LSm4p [KO:K12623]
LBRM_26_0020  putative Lsm7p protein [KO:K12626]
LBRM_14_1330  ENOL; enolase [KO:K01689] [EC:4.2.1.11]
LBRM_14_1320  ENOL; enolase [KO:K01689] [EC:4.2.1.11]
LBRM_32_4000  putative enolase [KO:K01689] [EC:4.2.1.11]
LBRM_29_2480  ATP-dependent phosphofructokinase [KO:K00850] [EC:2.7.1.11]
LBRM_30_2410  putative heat shock 70-related protein 1,mitochondrial precursor [KO:K04043]
LBRM_30_2420  putative heat shock 70-related protein 1,mitochondrial precursor [KO:K04043]
LBRM_30_2430  putative heat shock 70-related protein 1,mitochondrial precursor [KO:K04043]
LBRM_30_2440  putative heat shock 70-related protein 1,mitochondrial precursor [KO:K04043]
LBRM_32_2030  putative chaperonin HSP60, mitochondrial precursor [KO:K04077] [EC:5.6.1.7]
LBRM_35_2240  chaperonin HSP60, mitochondrial precursor [KO:K04077] [EC:5.6.1.7]
LBRM_35_2250  chaperonin HSP60, mitochondrial precursor [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
lbz03015  mRNA surveillance pathway
KO pathway
ko03018   

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