KEGG   PATHWAY: ldo03018
Entry
ldo03018                    Pathway                                
Name
RNA degradation - Leishmania donovani
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ldo03018  RNA degradation
ldo03018

Other DBs
GO: 0006401
Organism
Leishmania donovani [GN:ldo]
Gene
LDBPK_231820  Csl4p homologue, putative [KO:K07573]
LDBPK_140010  exosome complex exonuclease, putative [KO:K03679]
LDBPK_040130  exosome complex exonuclease RRP40, putative [KO:K03681]
LDBPK_365120  exosome-associated protein 4, putative [KO:K12587]
LDBPK_363170  exosome complex exonuclease rrp41, putative [KO:K11600]
LDBPK_221430  exosome complex exonuclease RRP45 homolog, putative [KO:K03678]
LDBPK_280470  rrp44p homologue, putative [KO:K12585] [EC:3.1.13.-]
LDBPK_044330  hypothetical protein [KO:K12591] [EC:3.1.13.-]
LDBPK_364190  hypothetical protein [KO:K03514] [EC:2.7.7.19]
LDBPK_363150  ATP-dependent RNA helicase, putative [KO:K12598] [EC:5.6.2.6]
LDBPK_210880  hypothetical protein [KO:K12604]
LDBPK_251920  hypothetical protein [KO:K12580]
LDBPK_221480  CCR4 associated factor, putative [KO:K12581]
LDBPK_344180  cell differentiation protein-like protein [KO:K12606]
LDBPK_301390  ATP-binding cassette protein subfamily H, member 3, putative [KO:K12608]
LDBPK_366630  hypothetical protein [KO:K01148] [EC:3.1.13.4]
LDBPK_355360  polyadenylate-binding protein 1, putative [KO:K13126]
LDBPK_300250  ubiquitin hydrolase, putative [KO:K12571] [EC:3.1.13.4]
LDBPK_320760  hypothetical protein [KO:K12572]
LDBPK_350370  ATP-dependent DEAD-box RNA helicase, putative [KO:K12614] [EC:5.6.2.7]
LDBPK_060260  5'-3' exonuclease, putative [KO:K12618] [EC:3.1.13.-]
LDBPK_361870  exoribonuclease 2, putative [KO:K12619] [EC:3.1.13.-]
LDBPK_230600  5'-3' exonuclease XRNC, putative [KO:K12619] [EC:3.1.13.-]
LDBPK_320750  U6 snRNA-associated Sm-like protein LSm4p [KO:K12623]
LDBPK_010160  hypothetical protein [KO:K12625]
LDBPK_260010  Lsm7p protein, putative [KO:K12626]
LDBPK_251780  hypothetical protein [KO:K12627]
LDBPK_141240  enolase [KO:K01689] [EC:4.2.1.11]
LDBPK_323910  hypothetical protein [KO:K01689] [EC:4.2.1.11]
LDBPK_292620  ATP-dependent phosphofructokinase [KO:K00850] [EC:2.7.1.11]
LDBPK_302480  heat shock 70-related protein 1, mitochondrial precursor, putative [KO:K04043]
LDBPK_362130  chaperonin HSP60, mitochondrial precursor [KO:K04077] [EC:5.6.1.7]
LDBPK_321940  chaperonin HSP60, mitochondrial precursor, putative [KO:K04077] [EC:5.6.1.7]
LDBPK_362140  chaperonin HSP60, mitochondrial precursor [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
ldo03015  mRNA surveillance pathway
KO pathway
ko03018   

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