KEGG   PATHWAY: tpv03018
Entry
tpv03018                    Pathway                                
Name
RNA degradation - Theileria parva
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
tpv03018  RNA degradation
tpv03018

Other DBs
GO: 0006401
Organism
Theileria parva [GN:tpv]
Gene
TP01_0308  hypothetical protein [KO:K07573]
TP02_0081  hypothetical protein [KO:K03679]
TP03_0037  hypothetical protein [KO:K03681]
TP04_0603  hypothetical protein [KO:K12586]
TP01_0398  exosome complex exonuclease Rrp41 [KO:K11600]
TP01_1052  hypothetical protein [KO:K11600]
TP01_0907  hypothetical protein [KO:K12590]
TP01_0013  exosome complex exonuclease Rrp45 [KO:K03678]
TP01_0496  mitotic control protein Dis3 [KO:K12585] [EC:3.1.13.-]
TP03_0385  hypothetical protein [KO:K12591] [EC:3.1.13.-]
TP02_0312  hypothetical protein [KO:K03514] [EC:2.7.7.19]
TP02_0517  hypothetical protein [KO:K12598] [EC:5.6.2.6]
TP01_1063  hypothetical protein [KO:K12604]
TP02_0506  hypothetical protein [KO:K12604]
TP04_0397  hypothetical protein [KO:K12605]
TP03_0069  hypothetical protein [KO:K12580]
TP01_0345  hypothetical protein [KO:K10643] [EC:2.3.2.27]
TP04_0580  hypothetical protein [KO:K12581]
TP02_0463  hypothetical protein [KO:K12606]
TP02_0676  hypothetical protein [KO:K01148] [EC:3.1.13.4]
TP01_0945  polyadenylate binding protein [KO:K13126]
TP02_0456  hypothetical protein [KO:K12571] [EC:3.1.13.4]
TP02_0457  hypothetical protein [KO:K12571] [EC:3.1.13.4]
TP04_0757  hypothetical protein [KO:K12611] [EC:3.-.-.-]
TP03_0049  hypothetical protein [KO:K12613] [EC:3.6.1.62]
TP02_0613  ATP-dependent RNA helicase [KO:K12614] [EC:5.6.2.7]
TP02_0165  hypothetical protein [KO:K12618] [EC:3.1.13.-]
TP01_0842  5'-3' exonuclease [KO:K12618] [EC:3.1.13.-]
TP04_0369  exoribonuclease [KO:K12619] [EC:3.1.13.-]
TP01_0940  hypothetical protein [KO:K12620]
TP04_0304  hypothetical protein [KO:K12621]
TP02_0106  hypothetical protein [KO:K12622]
TP03_0516  U6 snRNA-associated protein [KO:K12623]
TP01_0806  U6 small nuclear ribonucleoprotein E [KO:K12624]
TP01_0992  U6 small nuclear ribonucleoprotein [KO:K12625]
TP03_0732  U6 snRNA-associated protein [KO:K12626]
TP03_0418  U6 snRNA-associated Sm-like protein LSm8 [KO:K12627]
TP04_0700  enolase [KO:K01689] [EC:4.2.1.11]
TP04_0501  hypothetical protein [KO:K03654] [EC:5.6.2.4]
TP02_0753  heat shock protein 70 [KO:K04043]
TP04_0066  heat shock protein 60 [KO:K04077] [EC:5.6.1.7]
TP03_0206  chaperonin 60 kDa [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
tpv03015  mRNA surveillance pathway
KO pathway
ko03018   

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