KEGG   Pelodiscus sinensis (Chinese soft-shelled turtle): 102463398
Entry
102463398         CDS       T02980                                 
Symbol
TRAF6
Name
(RefSeq) TNF receptor-associated factor 6
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
pss  Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss04010  MAPK signaling pathway
pss04120  Ubiquitin mediated proteolysis
pss04140  Autophagy - animal
pss04144  Endocytosis
pss04620  Toll-like receptor signaling pathway
pss04621  NOD-like receptor signaling pathway
pss04622  RIG-I-like receptor signaling pathway
pss05132  Salmonella infection
pss05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pss00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    102463398 (TRAF6)
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    102463398 (TRAF6)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    102463398 (TRAF6)
   04140 Autophagy - animal
    102463398 (TRAF6)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    102463398 (TRAF6)
   04621 NOD-like receptor signaling pathway
    102463398 (TRAF6)
   04622 RIG-I-like receptor signaling pathway
    102463398 (TRAF6)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    102463398 (TRAF6)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    102463398 (TRAF6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pss04131]
    102463398 (TRAF6)
   04121 Ubiquitin system [BR:pss04121]
    102463398 (TRAF6)
Enzymes [BR:pss01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     102463398 (TRAF6)
Membrane trafficking [BR:pss04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    102463398 (TRAF6)
Ubiquitin system [BR:pss04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    102463398 (TRAF6)
SSDB
Motif
Pfam: TRAF-mep_MATH zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 Med21 zf-RING_5 TRAF3_RING DUF4455 SlyX Sina_ZnF zf-RING_11 U-box DUF16 PspA_IM30 HMMR_N EzrA MTR4_beta-barrel TMF_DNA_bd
Other DBs
NCBI-GeneID: 102463398
NCBI-ProteinID: XP_006124531
Ensembl: ENSPSIG00000011001
UniProt: K7FW05
Position
Unknown
AA seq 547 aa
MSLLHSDNSYRAKELESGCCAAMASACCAGAKEDSISVSVSSGTGNLPNSFTEEIQGYDV
DFDPPLENKYECPICLMALREAVQTPCGHRFCKACIVKSIRDAGHKCPVDNEILLENQLF
PDNFAKREILSLSVRCPNKGCLQKMELRHLEEHELNCDFSCVECLQCQGSFQKNQLQNHM
MLECPRRQVSCPNCATSMSYEDQELHDQNCPLANVCCEYCNTVLIREQMPNHYDNDCPTV
PVPCTYSAFGCPEKMQRNELAHHMQEFTQVHMRMMAQSLRSLSITATTPMTFLSGVAFES
SLFSHVPPAPYDCNPDVENFKETIQQLEGRLVRQDHQIRELIAKMETQSVHVTDLKRTIQ
NLEEKLTEMEAQQCNGIYIWRIENFSTHLKAQEEEKPVVIHSPGFYTGKPGYKLCLRLHI
QLPNSQRCANFISLFVHTMQGKYDSHLPWPFQGTIRLSILDQSEGLERQNHEEVMETKPE
LLAFQRPTAHRNPKGFGYVTFMHLQTLKQRTYVKDDTLLVRCEIVTRLDLNSVRREGFQP
RSTNGAV
NT seq 1644 nt   +upstreamnt  +downstreamnt
atgagcttgctacacagtgacaacagctatagagccaaagaactagagtctggctgctgt
gcagccatggctagtgcatgctgtgctggagctaaagaagacagcataagtgtctctgtc
agcagtggaactggaaaccttccaaactccttcacagaggagattcaaggatatgatgtg
gactttgatccccccttggaaaataaatatgaatgtcccatctgtttgatggctctacgt
gaagcagtgcagacaccatgtggacaccgattttgcaaagcctgcattgtcaaatcaata
agagatgcaggtcacaaatgtccagtagacaatgaaattctacttgaaaaccagctattc
cctgacaactttgccaaacgggaaatcctttcactgagtgtgagatgtcccaacaagggc
tgccttcagaagatggagctgagacatctagaggaacatgagctaaattgcgacttctct
tgtgtggaatgcctgcaatgtcagggctccttccaaaagaaccagctgcaaaaccacatg
atgctggaatgccctcggcggcaagtctcttgtccaaattgtgccacatctatgagttat
gaagatcaagagcttcatgaccagaactgcccacttgcaaatgtgtgctgtgaatactgc
aatacagtgcttattagagagcagatgcctaatcattatgataatgactgcccgactgtt
ccagtaccatgtacatacagtgcctttggatgtcccgaaaagatgcagaggaatgaattg
gcacatcatatgcaagagtttactcaggttcacatgagaatgatggctcagagtctccgg
agtcttagtattactgccacaactcccatgaccttcctcagtggcgtagcctttgagtca
tctctcttctcgcatgtcccacctgccccatatgactgcaacccagatgttgagaacttc
aaggaaaccattcagcagttggaaggtcgcctggtaagacaagatcaccaaatcagagag
ctcattgctaagatggagactcagagcgttcatgtcacagacctcaaacgcactatccaa
aatctagaggaaaaactcaccgaaatggaggcgcagcaatgtaatggcatttacatctgg
aggattgagaacttcagcacacatctgaaagcccaagaagaagagaaacctgttgtgatc
cacagccctggcttctacactgggaaaccaggctacaaactgtgtttgcgcctgcatatc
cagttaccaaattctcaacgctgtgctaactttatatccctctttgtccatactatgcaa
ggaaaatatgacagtcatctgccttggccatttcaggggaccatacgactttctattttg
gatcagtcagaaggacttgaaagacagaatcatgaagaagtcatggaaaccaaacctgag
cttctggccttccagagaccaacagcccaccgcaacccaaaaggttttggttatgtgaca
ttcatgcacctgcaaactttgaagcaaagaacctatgtaaaagatgacactctcctggtg
cgctgtgagattgtaactcgcttagacttgaacagtgtacggcgagagggctttcagcct
cgcagtactaatggggctgtatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (9)   
   KEGG PATHWAY (9)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (24)   
   Pfam (24)   
All databases (65)   

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