KEGG   Rattus norvegicus (rat): 300338
Entry
300338            CDS       T01003                                 

Gene name
Mmp1b
Definition
(RefSeq) interstitial collagenase B
  KO
K01388  matrix metalloproteinase-1 (interstitial collagenase) [EC:3.4.24.7]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03320  PPAR signaling pathway
rno04657  IL-17 signaling pathway
rno04926  Relaxin signaling pathway
rno05171  Coronavirus disease - COVID-19
rno05200  Pathways in cancer
rno05219  Bladder cancer
rno05323  Rheumatoid arthritis
rno05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09151 Immune system
   04657 IL-17 signaling pathway
    300338 (Mmp1b)
  09152 Endocrine system
   03320 PPAR signaling pathway
    300338 (Mmp1b)
   04926 Relaxin signaling pathway
    300338 (Mmp1b)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    300338 (Mmp1b)
  09162 Cancer: specific types
   05219 Bladder cancer
    300338 (Mmp1b)
  09172 Infectious disease: viral
   05171 Coronavirus disease - COVID-19
    300338 (Mmp1b)
  09163 Immune disease
   05323 Rheumatoid arthritis
    300338 (Mmp1b)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    300338 (Mmp1b)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:rno01002]
    300338 (Mmp1b)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.24  Metalloendopeptidases
    3.4.24.7  interstitial collagenase
     300338 (Mmp1b)
Peptidases and inhibitors [BR:rno01002]
 Metallo peptidases
  Family M10
   300338 (Mmp1b)
SSDB
Motif
Pfam: Peptidase_M10 Hemopexin PG_binding_1 Metallopep Reprolysin_5 Reprolysin_4 Peptidase_M54 Reprolysin_3 DUF4953 Peptidase_M57
Other DBs
NCBI-GeneID: 300338
NCBI-ProteinID: XP_038938724
RGD: 1306843
Ensembl: ENSRNOG00000008881
Position
8
AA seq 460 aa
MLSLPLLLLLLATSSYSLPVSQDGAQQNVETVWKYLENLGEDMQAKNVDVKEVMDEKLRQ
MEQSFGLKVTGNSNSETPSAIKTPMCGVPDVTPYSITYNNTQWTKTHLTYSILNYTPHLP
RKVVEDAIERAFKVWSDVTPLTFERVFEEEGDIVLSFHQGDHGDLYSFNGSKSHFAHAFP
PGPGLGGDVHYDLDETWTNNSDNFNLFYVTAHELGHSLGLSHSKDEEALMFPSYTWNNKD
FVLNQDDISKIQALYGPSPNPIQPTDATPDPCSSGLTFDAITTYRGEVIFFKDRFYIRVI
SFLPKPLINVIDLIWPDLPSKIDAAYEASLVDELRFFKGNKVWAVQEQNVLRGFPTDIHS
FFGFPSSVTHIDAAVCEEETGKTYFFVDNMYWRYDENTRSMDPGYPRLIAEDFPGIDDKV
DDVFQKEDNFYFFHQSTQHIFNLQTRKIVDAPDSSSWFNC
NT seq 1383 nt   +upstreamnt  +downstreamnt
atgcttagccttcctttgctgttgcttctcttggctaccagctcatacagtctccctgtg
tctcaggatggagcccagcagaatgtggagacagtctggaaatacctggaaaacttgggt
gaagacatgcaagctaaaaacgtggatgtcaaggaggtgatggatgaaaagctgagacaa
atggagcagtcatttgggctgaaagtgacaggaaattcaaattctgaaaccccgagtgct
atcaagacacccatgtgtggggtgcctgatgtgaccccatattcaattacttataacaat
actcagtggaccaaaacacatctgacttacagcattttaaactacacaccacatttgcca
agaaaagttgtggaagatgccattgagagagcctttaaagtctggagtgatgtgacacca
ctaacattcgaaagggtctttgaggaggaaggagatattgtgctctccttccaccaagga
gaccatggtgacctttactcatttaatggatctaaatcccactttgcccacgcttttccg
ccaggcccaggtttggggggcgatgttcattatgatctggatgagacgtggaccaacaac
agtgacaatttcaacttgttctacgttacagctcatgaactgggccactcccttggactc
tcccattctaaggatgaagaggcactaatgttccccagttacacatggaacaataaagac
tttgtactaaaccaggacgatattagtaaaatccaggctttatatgggccttccccaaat
cctatccagccaacagatgccacaccagatccatgtagtagtggtctgacctttgatgct
ataacgacatatcggggggaggtgatattctttaaagacaggttctacattcgtgtaatt
agcttcctgccaaaacctttgatcaatgtgatagatcttatctggccagatttgccaagt
aaaattgatgctgcttatgaagctagtttggtagatgagctccgctttttcaaaggcaat
aaagtctgggctgttcaggaacagaatgtactgagaggattccccacagacatccacagc
ttctttggcttccctagcagtgtgacacacattgacgctgccgtttgtgaggaagagact
ggaaaaacatacttcttcgttgacaacatgtactggaggtatgatgaaaatacacggtcc
atggatccaggttaccctagattaatagcagaagactttcctggaattgatgataaagtt
gatgatgttttccagaaagaggataatttctatttctttcaccaatcaactcaacacatt
tttaacctccaaacaagaaaaattgttgatgcccctgattctagttcctggttcaactgc
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (8)   
   KEGG PATHWAY (8)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (31)   

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KEGG   Rattus norvegicus (rat): 300339
Entry
300339            CDS       T01003                                 

Gene name
Mmp1
Definition
(RefSeq) interstitial collagenase precursor
  KO
K01388  matrix metalloproteinase-1 (interstitial collagenase) [EC:3.4.24.7]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03320  PPAR signaling pathway
rno04657  IL-17 signaling pathway
rno04926  Relaxin signaling pathway
rno05171  Coronavirus disease - COVID-19
rno05200  Pathways in cancer
rno05219  Bladder cancer
rno05323  Rheumatoid arthritis
rno05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09151 Immune system
   04657 IL-17 signaling pathway
    300339 (Mmp1)
  09152 Endocrine system
   03320 PPAR signaling pathway
    300339 (Mmp1)
   04926 Relaxin signaling pathway
    300339 (Mmp1)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    300339 (Mmp1)
  09162 Cancer: specific types
   05219 Bladder cancer
    300339 (Mmp1)
  09172 Infectious disease: viral
   05171 Coronavirus disease - COVID-19
    300339 (Mmp1)
  09163 Immune disease
   05323 Rheumatoid arthritis
    300339 (Mmp1)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    300339 (Mmp1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:rno01002]
    300339 (Mmp1)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.24  Metalloendopeptidases
    3.4.24.7  interstitial collagenase
     300339 (Mmp1)
Peptidases and inhibitors [BR:rno01002]
 Metallo peptidases
  Family M10
   300339 (Mmp1)
SSDB
Motif
Pfam: Peptidase_M10 Hemopexin PG_binding_1 Metallopep Reprolysin_5 DUF4953 Reprolysin_4 Reprolysin_3 Peptidase_M54
Other DBs
NCBI-GeneID: 300339
NCBI-ProteinID: NP_001128002
RGD: 1307917
Ensembl: ENSRNOG00000032353
UniProt: B5DFD5
Position
8
AA seq 464 aa
MLSLPLLLLLLATSSYSFPVFQDGARQNVETVWKYLENYYNLGEDVQAKNVDAKEVMAEK
LRQMQQLFGLKVTGNSNSETLSAMRKPRCGVPDVAPYAITHNNPRWTKTHLTYSILNYTP
YLPKEVIENAIERAFKVWSDVTPLTFERVFEEEGDIVFAFYRGDHSDNNPFDGPEYGLAH
TFPPGPRLGGDVHYDLDETWTDNSDNFNLFYVTAHELGHSLGLTHSRDVGALMFPSYTWY
TEDFVLNQEDINRIQALYGPSPNPIQPTGATTPHPCDGDLTFDAITTFRGEVMFFKGRFY
IRVNKFMPEAELNLIGIIWPNLPGKLDAAYEVSMIDQVRYFKGNKVWVVREHTVLRGFPT
DIHSFFGFPSSVTHIDAAVCEEETGKTYFFVDNMYWRYDENTQSMDPGYPRLTAEDFPGI
DDKVDDVFQKGENFYFFHQSVQRRFSLRIRRVDDSRDSSTWFNC
NT seq 1395 nt   +upstreamnt  +downstreamnt
atgcttagccttcctttgctgttgcttctcttggctaccagctcatacagtttccccgtg
tttcaggacggagcccggcagaatgtggaaacagtctggaaatacctggaaaactactac
aacttgggtgaagacgtccaagctaaaaacgtggatgccaaggaggtgatggctgaaaag
ctgaggcaaatgcagcagttatttgggctgaaagtgacaggaaattcaaattctgaaacc
ctgagtgctatgaggaaacctaggtgtggggtgcctgatgtggccccatatgccattact
cacaacaatcctcgttggaccaaaacacatctgacttacagcattttaaactacacacca
tatttgccaaaagaagttatagaaaacgccatcgagagagcctttaaagtctggagtgat
gtgacaccactaacattcgaaagggtttttgaggaggaaggtgatattgtgttcgccttc
tacagaggagaccatagtgacaataacccatttgatggacctgaatatggacttgctcac
acattcccaccaggcccacgtttggggggcgatgttcattatgatctggatgagacgtgg
accgacaacagtgacaatttcaatttgttctatgttacggctcatgaactgggccactcc
cttggactcactcattctagagatgtaggagcactaatgttccccagctacacatggtac
actgaagactttgtgctaaaccaggaggatattaatcgcatccaggctttatatgggcct
tccccaaatcccatccagccaacaggtgcaacaacaccacatccatgtgatggtgatcta
accttcgacgctataactacgtttaggggagaggtgatgttctttaaaggcaggttctac
attcgtgtaaataagttcatgccagaagctgagctcaatttgataggtattatctggcca
aatctgccaggtaaacttgatgctgcttatgaagttagtatgatagatcaagtccgctat
ttcaaaggcaataaagtctgggttgttcgagagcatactgtactgagaggattccccaca
gacatccatagcttctttggcttccctagcagtgtgacacacattgacgctgccgtttgt
gaggaagagactggaaaaacatacttcttcgttgacaacatgtactggaggtatgatgaa
aatacacagtccatggatccaggttatcctagattaacagcagaagatttccctggaatt
gacgataaagttgatgatgttttccaaaaaggcgaaaatttctacttctttcaccaatca
gttcaacgcagatttagcctccgaataagaagagttgatgactcccgtgattctagtacc
tggttcaactgctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (8)   
   KEGG PATHWAY (8)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (9)   
   Pfam (9)   
All databases (33)   

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