KEGG   Sorghum bicolor (sorghum): 8079212
Entry
8079212           CDS       T01086                                 
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic isoform X1
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    8079212
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sbi03041]
    8079212
Enzymes [BR:sbi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     8079212
Spliceosome [BR:sbi03041]
 Complex C
  Other components
   Step II factors
    8079212
SSDB
Motif
Pfam: Helicase_C IBR DEAD OB_NTP_bind zf-RING_UBOX zf-RING_5 AAA_19 zf-C3HC4_4 zf-C3HC4_2 zf-C3HC4 AAA_22 Secretin_N AAA_30 AAA_29 RsgA_GTPase Arc_MA ABC_tran gp37_trimer
Other DBs
NCBI-GeneID: 8079212
NCBI-ProteinID: XP_002463194
Position
2:complement(73502718..73511088)
AA seq 1750 aa
MRRSQDRGLFRPPDWVPRPPHHHRDHHYHNEHRYPPHSHPHRDRHYSTEHRYQPRAQHQR
DCHVQPPPPPSQFEVLLVRPGSDLSAPTAIEVEALVAGLPSPAPASISVHSSGRHAARLV
FASISDAAAAARELWALRLEGLHLLTLDLPHPALAAHASPRIASLFASHASRLLDSDLVA
LSAARSAELAASIRDVKQRLGSRNRFRDFHLLDLEKKTLESEKKLIDAKIAEYKEAMLSI
QRAMSPGSGDKEEGVNLFGAVEGADVDFVRVHMMLLRECRRLKEGLPIYAYRRRILNHIL
ANQVMVLIGETGSGKSTQLVQFLADSGLAGGGSIICTQPRKLAAISLAHRVDEESKGCYG
ERSVLSYSTLLNSPQGFGTKIIFTTDSCLLHYCMSDRSLNGISYIIIDEAHERSLNTDLL
LAMIKKKLLDRLDMRLIIMSATADADRLAEYFYGCQTFHVKGRTFPVEIKYVPDISAEAS
LNSVSSMSSVASATASYVTDVVQMVNIIHKNEEEGAILAFLTSQLEVEWACETFSDPNAV
VLPMHGKLSSVEQNLVFKSYPGKRKIIFCTNIAETSLTIKEVKYVVDCGLAKEYRFVPSS
GLNVLKVNWISQSSANQRAGRAGRTGAGKCYRLYPESDFGMMEAHQEPEIRKVHLGTAVL
RILALGVTDVKYFEFIDAPDPEAINMAVHNLEQLGAIEYKCSGFELTDTGRDLVKLGIEP
RLGKIMLDCFSYGLMKEGLVLASVMANASSIFCRVGTNEEKYKADRLKVPFCHPDGDLFT
SLAVYKKWEAGHDNKNMWCWQNCINAKTLRRCQETISELEKCLMHELNIIVPSYWSWNPE
EPTMHDTSLKKIILSSLRGNLAMFSGHEKFGYQVISADQPVQLHPSCSLLTYGSKPEWVV
FSEILSVPNQYLVCVTAVDRNDVCTVHSMSSFIKQLEESKLQRKVITGIGNKSLRRFCGK
CGQNLQKIISLLREDCRDDRIMVDLDFSSSEVSLFAKEHDMEAVFCMVNDALELEAKMLR
DECDERRCGGSTIALFGSGAEIKHLELGKRCLTVEILHQNARDIDEKELIGLVYSHVPGI
ANFHKLGNFQSNADETKWGRFTFLKPDFADDAISKLNGIEFHGSSLKVGPVSAYNHSGLP
FPAVRAKVSWPRKPSRGLALVTCASGEAEFIVKDCFALGVGGRYINCEISKKYANCVFVT
GVPLHVTEPELYDAFRSTTTRRILDIRLLRGAPTASSSDSECAEALMRAISLFMPNRNFP
GQNFRVHVIPPEEKDSMMRATITFDGSFHREAARALDHLQGSVLPCCLPWQIIQCQHVFH
STVSCPMRIYNVISQEVGVLLESFRSEKGVSYNLEKNENGHFRVKLTANATKTIADLRRP
LELLMKGKIINHPDLMLSTVQLLWSRDGMEHLKSVEQETGTYILYDRQSLNIKVFGSTDK
VAAAEEKLVRALIQLHEKKPLEVCLRGQNLPPNLMKEVIKKFGADLEGLKSEVPAVDLQL
NTRRQTLYVRGSKEDKQRVEEMISELIASSDHNAPLPSKNACPICLCELEDPFKLESCGH
MFCLACLVDQCESAMKSQDGFPLCCLKNGCKKLLLLADLRSLVPDKLDELFRASLNAFVA
SSAGLYRFCPTPDCTSIYQVAAAGAEDKPFVCGACSVETCTKCHLEYHPFISCEAYKEYK
ADPADATLLQWRKGKENVKNCPKCGYTIEKAEGCNHVECRCGCHICWNCLENFKSSEECY
GHLRSVHLSY
NT seq 5253 nt   +upstreamnt  +downstreamnt
atgcgccgatctcaggaccgcggactcttccgcccgccggactgggtcccacggcctccc
caccaccaccgcgaccaccactaccacaacgaacaccggtatccgcctcactcacacccc
caccgcgaccgacactacagcaccgaacaccggtatcagccccgtgcccagcaccagcgc
gactgccacgtgcagccgccccctccgccgtcgcagttcgaggtactcctcgtccgcccg
ggctccgatctgtccgccccgaccgccattgaggtggaggccctcgtcgcgggcctccca
tcgccggccccggccagcatctccgtccactcctccggtcgccatgccgcgcgcctcgtc
ttcgcctccatctcggacgccgcggccgccgcgcgcgagctgtgggcgctccgcctcgag
gggctccacctcctcaccctcgacctcccgcaccccgccctcgccgcccacgcctcgccg
cgcatcgcctcgctcttcgcctcccatgcctcccgcctcctagactccgacctcgtggcc
ctctcggccgcccggtccgccgagcttgcggcgtccatacgggatgtaaagcaacgtctg
ggctcgcgtaaccgcttccgcgatttccatctgctggacctcgagaagaagacactggag
tctgagaagaagttgatcgatgccaaaattgccgagtacaaggaggcgatgttgtcgata
cagcgcgcaatgtcccccggatcgggggacaaggaggagggtgtcaacttgtttggagct
gtggaaggtgcggatgtggactttgtgagggtgcatatgatgctgctgcgtgagtgccgg
aggcttaaggagggcctgccgatctatgcataccgcaggaggattcttaaccatattctt
gctaatcaggtcatggtcttaataggagaaacaggttctgggaagagcacacaattggtt
cagtttcttgctgactcaggtcttgctggtggtggctccatcatatgtactcaacctcgg
aagcttgctgctatatctttagcacatagagtagatgaagaaagtaagggctgttatggg
gaacgttctgtgctgtcatattcaaccttgctaaattctcctcaaggttttggcactaag
attatattcaccacagacagttgtcttctgcattactgcatgagtgataggagtctgaat
ggcatttcctatattattatagatgaagctcatgaaaggagcttgaatactgatcttctg
ttagctatgattaagaagaagctgcttgataggctggatatgcggctcattataatgtct
gccactgctgatgctgacagacttgctgaatatttttatggctgtcaaacatttcatgtt
aaagggcgaacttttcctgttgaaattaaatatgtcccagatatatcagcagaggcttca
ttgaatagtgtatcaagtatgtcctctgttgcttctgctaccgcttcttatgttactgat
gttgtacaaatggtaaatatcatccataagaacgaggaagagggtgctatacttgctttt
ttgacatctcagctggaagtagaatgggcctgtgaaacattcagtgatccaaatgctgtg
gtacttccgatgcatggaaagctttcttctgtagagcagaatcttgtcttcaaaagctac
cctggaaagagaaagattatcttctgcacgaatatagctgaaacatcattgaccataaaa
gaagtgaagtatgttgttgattgtggcttggccaaggaatacagatttgttcccagtagt
ggtctcaatgtactcaaagtcaattggatttcccaaagctctgctaatcaacgtgctggc
cgtgctggccgaaccggagcagggaagtgttacaggctctacccagaatctgacttcggt
atgatggaagcgcatcaagaacctgaaattcgtaaagttcatctcggcactgctgttctg
agaatacttgctttgggcgttacggatgtaaaatattttgagttcattgatgccccagat
cctgaggctatcaatatggctgtgcataatcttgaacaacttggtgctatagaatataaa
tgtagtggatttgagctaactgacactggacgtgatctggtcaaattaggcattgagcca
aggcttgggaaaatcatgcttgattgcttcagctatggtttgatgaaagaaggtttagtc
ctagcctctgttatggcaaatgctagtagcatattttgtagagtgggtacgaatgaggag
aaatataaagctgaccgcctgaaagttcctttctgtcaccctgatggagaccttttcact
tcacttgctgtgtataagaagtgggaggctgggcatgataacaaaaatatgtggtgctgg
cagaattgtatcaatgccaagaccctgaggaggtgccaggaaactatatctgaacttgaa
aaatgtctaatgcatgagctaaatattatcgttccaagttattggagttggaaccctgag
gagcctactatgcatgatacttcactaaagaagattattctatcatctcttagaggtaat
cttgctatgttttctggacatgagaaattcgggtatcaggtgatttcagcagatcagcct
gtgcaacttcacccttcatgctcattgctcacttatggcagcaagcctgaatgggtggta
ttttcagaaatcttgtcagtcccgaatcaatatttggtatgtgtaactgctgttgatcgt
aatgacgtgtgcacagttcactccatgtcttcttttattaagcaactggaggagagtaaa
ttgcagcggaaagtcattactgggattggaaataaatcgctgagaagattttgtggtaaa
tgtggccaaaatctgcagaaaatcatctcacttctgagagaagattgcagagatgaccgc
ataatggttgatttagacttcagtagcagtgaagtttcattatttgctaaagagcatgac
atggaagcagtcttttgcatggttaatgatgctttggaacttgaagctaaaatgctgagg
gatgaatgtgatgagagaagatgtggtggctctactattgccctatttggctctggtgct
gaaatcaagcatttggaacttgggaagagatgcctaacagtggagattctgcaccaaaat
gctcgtgatatagatgaaaaggaacttattggtttggtatattctcatgttcctggcata
gctaattttcataaactcgggaattttcagtcaaacgcagatgaaacaaagtgggggagg
tttacattcctcaaaccagattttgctgatgatgccatttcaaaattgaatgggattgag
tttcatggttcctctctaaaggtgggtcctgtaagtgcttacaaccactcagggctacca
tttcctgcagtaagagctaaagtttcttggccacgtaagccaagcaggggacttgcactt
gtaacatgtgctagtggggaagctgaatttattgtaaaggactgctttgcccttggggtt
ggtggaaggtatatcaactgtgagattagtaaaaagtatgcaaactgtgtctttgtcaca
ggggttccattgcatgtaacagagccagaattgtatgatgcttttcgtagtacgaccact
aggagaatccttgacatccgcttgcttagaggagcacccacagccagctcttccgattct
gaatgtgcagaagcactgatgagagcgatatcactattcatgccaaataggaattttcct
ggccaaaatttccgtgttcacgtgatccctccagaagagaaagactcaatgatgagagct
accataacctttgatggaagctttcacagagaggctgcaagagcactggaccatcttcaa
ggaagtgttcttccttgttgtcttccttggcagataatccagtgccagcatgtatttcat
agtactgtctcctgtccgatgcgcatatacaatgtcatcagccaagaagttggtgttcta
cttgagagcttccgtagtgaaaaaggtgtgtcatacaatttggagaagaacgagaatggt
catttccgtgttaagcttactgcaaatgccacaaaaacaatagcagatttgagaaggcct
cttgagcttttgatgaaaggaaaaattataaaccatcctgatctgatgttaagcacagtt
caactgctatggtcccgtgatggtatggaacatttgaaatcagttgaacaggagactggc
acttacattctgtatgacaggcaaagtctgaatattaaagtctttgggagcactgataag
gtggctgcagcggaggaaaaattggttcgtgcacttatacagctccatgagaagaagcct
cttgaagtttgtctccgtggccagaacctcccaccaaacttgatgaaggaagtgattaaa
aagtttggagctgatttagaaggactgaagagtgaggttcctgcagtagatcttcagcta
aacacacgaagacagacactttatgttcgaggcagcaaggaggacaagcaaagggtggaa
gagatgatctctgaactgatagcctctagtgaccataatgctccactgccatcaaagaat
gcatgtcctatttgcctgtgcgagctagaagatccttttaagcttgaatcctgtggtcat
atgttttgtttggcatgcttggtggatcagtgtgaatctgccatgaaatcgcaagatggc
ttccctctttgttgcctcaaaaatgggtgcaagaagctcctcctcctagctgatctgagg
tctcttgtgcctgacaagctggacgagttgttcagggcttccttaaatgcatttgttgca
tctagcgcaggattataccgtttctgccccacacctgactgcacatccatttaccaagta
gctgctgcaggtgcagaagacaaaccctttgtctgtggggcttgctctgtggagacctgt
accaagtgccatctcgagtaccatccttttatctcttgtgaggcatacaaagagtacaag
gcagacccggcggatgcgactctgcttcaatggcgcaaagggaaggagaacgtaaagaat
tgccctaagtgtggatatacaattgagaaagctgaaggttgcaaccatgttgagtgcagg
tgtggctgccacatttgttggaattgcttggagaacttcaagagcagtgaggagtgttat
ggccatctcaggtctgtgcacttatcctattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (18)   
   Pfam (18)   
All databases (31)   

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