KEGG   Streptococcus parasanguinis FW213: Spaf_1815
Entry
Spaf_1815         CDS       T02115                                 
Symbol
recD
Name
(GenBank) helicase
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
scf  Streptococcus parasanguinis FW213
Pathway
scf03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:scf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Spaf_1815 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:scf03400]
    Spaf_1815 (recD)
Enzymes [BR:scf01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Spaf_1815 (recD)
DNA repair and recombination proteins [BR:scf03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Spaf_1815 (recD)
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 UvrD_C_2 SH3_13 AAA_11 Viral_helicase1 DEAD UvrD-helicase HHH_5 AAA_22 nSTAND3 UvrD_C Herpes_Helicase RsgA_GTPase T2SSE AAA_28 AAA_29 Zeta_toxin 5_3_exonuc TsaE SLFN-g3_helicase PIF1 TrwB_AAD_bind AAA_25
Other DBs
NCBI-ProteinID: AFJ26763
UniProt: I1ZNY9
Position
1836255..1838723
AA seq 822 aa
MSQPCFIKRKEMMEYYFSGTIERIIFENPSSFFRILLLDISDTDAEDFDDFEIIVTGTMA
DIMEGEDYTFWGELVHHPKYGEQLKISRYERAKPSSKGLVKYFSSDHFKGIGLKTAQKIV
DLYGDNTIDKILEAPEKLEEITGLSKKNRLVFVDKLRQNYGTERILAQLANYGIPNKLAF
QIQDFYKEETLQIVEQQPYRLVEDIQGLGFKIADQLAEELGIASDAPERFRAGLIHSLFS
YSIETGNTYIEAKDLLRYSIDLLESARPVELDPSTVAQELGHLIEEDKVQNVDTKIFDNS
LFFAEEGIRSHIGRLLEKGKQTSFDPEKINQAIKEVEKDLGIHYDAIQKEAIHQAIQNKV
FILTGGPGTGKTTVINGMISVYAQLHQLDLRKKQDLPILLAAPTGRAARRMNELTGLPSA
TIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLLNNIATDTKLLIVGDADQ
LPSVSPGQVLADLLQIPSIPQTKLEHIFRQSEDSTIVSLAGDIRQGKLPQDFTERKADRS
YFEAGSEHIPKMIEQITSAALRSQIPARDIQVLAPMYKGQAGIDNINTLMQDLLNPAVKD
QVVFDSPDCQYRDGDKVIHLVNDAESNVFNGDIGYITDLLPGKYTESKQDELTIQFDGNE
IVYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITNQSHRMLQRNLIYTAITRSKSKLIL
LGEYSAFDFATKNTGTARKTYLVERFKNLDGGEATTDYSSSVATASATVESARSKEGTVE
TKAETSKPTVYRLTEDNLHAISPMIGLTEEEIAAFFDIKQPN
NT seq 2469 nt   +upstreamnt  +downstreamnt
atgtcccagccttgctttataaaaaggaaagaaatgatggaatattatttttctggtact
attgagcgcattatttttgaaaatcccagtagtttttttcgaatcctccttctcgacatt
agcgataccgatgccgaagactttgatgattttgagattattgtgacgggcaccatggca
gatatcatggaaggcgaagactacaccttctggggggagctggtccatcatcctaaatac
ggagaacagctcaaaatcagccgctatgaacgggctaaaccctctagcaagggcttggta
aaatatttttccagcgatcacttcaagggaattggtctcaaaacagcccaaaaaatcgtg
gacctctatggggacaataccattgacaaaattctggaagcacctgaaaaattagaagaa
atcacaggcctctccaagaaaaaccgcctggtttttgtggataaactccgtcagaattac
ggaacggagcgtattctcgcccaactagccaattatggcatccccaataaactagccttt
caaatccaggatttctacaaggaagaaaccctccagatcgtggagcaacagccctaccga
ttggtggaagatatccaaggcttgggttttaaaatcgcggaccaactggcagaagaattg
ggcatcgcaagtgacgcccccgagcgtttccgcgcgggtctgattcacagtctcttcagc
tactctatcgagactggaaatacctatattgaagccaaagacctcctgcgctatagcatt
gaccttttggaatcagcgcgtccagtagaattggatccttctactgtcgcccaagaatta
ggccacctcatcgaggaagacaaggtccaaaatgtggataccaagatctttgacaatagc
cttttctttgcggaagaagggattcgtagtcacattggtcgattgctggagaaaggaaag
cagacttcatttgaccctgagaaaatcaaccaggcaattaaagaggttgaaaaagatctg
gggattcactacgatgcgattcaaaaagaggcgattcaccaggcgattcaaaacaaggtc
tttatcctcactgggggtccagggacaggaaagaccaccgttatcaatgggatgattagt
gtctatgcccaactccaccagctggatcttcggaagaaacaagacctgccgatcctcttg
gctgccccaacgggacgggcagctaggcgcatgaatgagctaacagggcttccgagcgcc
accatccaccgtcatttggggatgactggggatgatgacaccagccacttagaggactat
ctggatgcagactttatcattgtggacgaattttccatggttgatacctggctggccaat
caattacttaacaacatcgcaacggataccaaactcttgattgtgggagatgccgaccaa
ttaccttccgtcagccctggtcaggtcttggctgatctcttgcagatcccaagcatccct
cagaccaaactggaacatattttccgccagagtgaagattcgaccattgtctccctggca
ggagacattcgccagggcaagctccctcaagatttcacagaacgaaaagccgaccgctct
tatttcgaagccggaagcgaacacatccctaagatgatcgaacagatcacctctgctgcc
cttcgcagtcagatcccggctcgagatatccaagtcttggcaccgatgtacaagggccag
gccggcattgacaacatcaatacactcatgcaagaccttctcaatccagctgtcaaagac
caggtcgtctttgactcgccagactgccaataccgcgatggagataaggtcatccatctg
gtcaatgatgcagaaagcaatgtctttaatggagatattggctacattaccgatcttctc
cccggaaaatatacagaatcgaagcaagatgaattgactatccaatttgatggcaatgaa
atcgtctacccgcgcaatgaatggtacaagattcgcttagcctatgcgatgagtattcac
aaatcgcaaggaagcgaatttcctgtggtgattttacccattacgaatcaaagccaccgg
atgttgcaacgtaatttgatctataccgccatcacgcgctcaaagagcaagctgattctc
ttaggagaatacagcgcctttgatttcgctactaaaaatacaggtacagcgcgcaagacc
tatttggttgaacgcttcaagaacctggacggaggcgaggcaaccacagactattcttca
tccgttgcaacggcttctgctacagtcgaatctgcacgaagcaaggaagggactgttgaa
acgaaagcagagacgtctaagcctactgtctatcgactaacagaagacaatctccacgcc
atctcgcctatgattggactaacagaagaagagattgcagccttctttgatatcaaacaa
cctaattga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (25)   
   Pfam (25)   
All databases (35)   

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