KEGG   Shewanella sp. WE21: CKQ84_19320
Entry
CKQ84_19320       CDS       T05404                                 
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
shew  Shewanella sp. WE21
Pathway
shew03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:shew00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    CKQ84_19320 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:shew03400]
    CKQ84_19320 (recD)
Enzymes [BR:shew01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     CKQ84_19320 (recD)
DNA repair and recombination proteins [BR:shew03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     CKQ84_19320 (recD)
SSDB
Motif
Pfam: AAA_19 AAA_30 Viral_helicase1 UvrD_C_2 AAA_11 RecD_N SH3_13 Helicase_RecD UvrD-helicase AAA_22 SLFN-g3_helicase AAA_28 DEAD nSTAND3 PhoH SRP54 PIF1 ResIII UvrD_C AAA_16 T2SSE NTPase_1 TrwB_AAD_bind Flavi_DEAD NACHT TMEM82
Other DBs
NCBI-ProteinID: AVI67809
UniProt: A0A2R3EYM8
Position
complement(4332094..4334295)
AA seq 733 aa
MMRSTQGLNAHSLTAAKWIDHGAIQLTAPLPELLKQWEQERLLTPLDRHFALEMSHLHPS
DSQQPLFILLCALLSQQLSSQHSCLVLAHIVPLNPMAEQNSHCKISLSLEALTETLQTFD
AVGQAGSNKPLIFDNGRLYLQRYHQFETSVAASLIRLSGSVSRQLSEETSHQKQPQIAKL
RSLLDQLFPANVLAPHALTTNVLTNSEDTAPIDWQKVATATALGKKLSVITGGPGTGKTT
TVTKLLLLLQMESQQEIRLVAPTGKAAARLSESIKASKARLAKELSAHANVIDEARNRNN
KDFLTALGRIPEEASTLHRLLGVIPNSPHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLL
SALPEHASLILLGDQDQLASVEAGAVLADICAGLKIPVDPNNLAQNNIASNSPALWQMRY
SKEQAERLSALTGFELTPCISNAPKLGDSLCMLMHSHRFKGDAGIGLLASAVNRADLQGI
LQVWQQGPAELSWLEHSMIVSQTQAKVSEPANNVGLNLLLEQACQQYGAYLGALNSHASN
NDASKRPSTADIIERFNQYRILCAMRSGDYGVEGINQFVTQALANAKLIKPLQEFYLGRP
IIIQSNDYNLGLFNGDIGLILQDEDKPERLMAHFIKADGSLLKVLPARLPSHETCYAMTV
HKSQGSEFSRVALVLPPSPSLAQWQLLTKELVYTAITRAKVHFTCLGTQHVFERASSQAT
QRASGLADRLWGE
NT seq 2202 nt   +upstreamnt  +downstreamnt
atgatgcgctcaacccaagggctaaatgcacattcactcacagcagcgaaatggatagac
catggcgcaattcagcttacagcgccgctgccagagctgttaaaacagtgggagcaagaa
cgactgctcacaccgctcgatcggcatttcgcactcgaaatgagtcacttgcatccaagc
gacagccaacagcccttgtttattttgctgtgtgcgctattaagccagcaattatcttca
cagcacagctgcctagtactcgctcatatcgtgccgcttaatcccatggccgagcaaaat
agccattgtaaaatcagtttaagtctcgaagcgctcactgagaccttgcaaacctttgat
gccgtcggccaagcgggcagtaacaaaccgcttatttttgataatggcagactctattta
caacgttatcatcaatttgaaacctcagtggccgcctcattaatccgcttgtccggaagt
gtatctaggcaattatctgaagaaacaagccaccaaaagcaaccgcaaatcgctaagttg
aggtcactgctagatcaactgttccctgccaatgtgctcgcgccccatgcactcactacc
aatgtactaactaacagtgaagacacagcacccattgattggcaaaaggtcgccacggcc
acagcgctgggtaaaaaactgtcagtgatcactggcggcccagggacgggcaaaaccact
actgtgactaagcttttgttattgctacaaatggaatcacagcaggaaatccgtttagtc
gcgccaacgggaaaagcggcggctcgcttaagcgaatcaatcaaagcctcaaaagcgcgt
ctggcgaaggaactcagcgcccatgctaatgttattgatgaagctcgcaatagaaataac
aaagactttttaacagctctgggacgtattccagaggaagcttcaaccttacacagactg
cttggggtgatccccaattcgccgcactttcgccaccatcaaggtaatccgcttaggctc
gacttattgattgtcgacgaagcctctatggtcgatttgcccatgatgtataaattgctg
agcgcattgcctgagcacgccagtttgattttactcggcgatcaggatcaactcgcctcg
gttgaggcgggcgctgtgctcgccgatatttgtgcgggccttaaaataccagtagatccc
aataaccttgctcagaacaacatagcgtcaaacagcccagctctgtggcaaatgcgctat
tccaaggaacaagccgagcgtctgagtgctttaacgggttttgagttaacgccctgtatc
agcaatgcccctaaacttggcgatagcttatgtatgctaatgcacagccacagatttaaa
ggcgatgcagggattggactgctcgccagtgccgtcaatcgcgctgatcttcaaggtatt
ttgcaggtatggcaacaaggacctgcagaattgagctggttagaacacagtatgatcgta
agccaaacccaagccaaagtaagcgagcctgctaataatgtgggactcaatttactgctg
gagcaagcctgccagcaatatggcgcttatctcggtgccttgaatagccatgcaagtaac
aatgatgcaagtaagcgtccaagcacagctgacatcattgaacgctttaaccagtaccgt
attctatgtgctatgcgctcgggcgattatggggttgaaggcattaatcaatttgtgact
caagcactggccaatgccaagctgattaaaccgctacaggagttttatctgggtcggccc
attatcatccaaagcaatgactataacttaggcctgtttaacggtgatatcggattgatt
ttgcaggatgaagataaacccgaacgtttaatggcgcactttatcaaggccgatggcagc
ctgttaaaagtcttgccagcccgtttgcccagccatgaaacctgttatgccatgacagta
cacaaaagccaaggcagcgaatttagccgtgtggccttagtattgccgccgagccccagc
ctagcccaatggcaactgctgaccaaagaattggtctacaccgccatcacccgcgctaaa
gtccactttacctgcttaggcacccagcacgtattcgagcgggccagtagccaagcaacc
caacgcgcatcgggtcttgccgaccgcctttggggtgaatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (26)   
   Pfam (26)   
All databases (36)   

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