KEGG   Solanum tuberosum (potato): 102585171
Entry
102585171         CDS       T02981                                 
Name
(RefSeq) putative uncharacterized protein At4g01020, chloroplastic
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
sot  Solanum tuberosum (potato)
Pathway
sot03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102585171
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sot03041]
    102585171
Enzymes [BR:sot01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     102585171
Spliceosome [BR:sot03041]
 Complex C
  Other components
   Step II factors
    102585171
SSDB
Motif
Pfam: Helicase_C DEAD IBR OB_NTP_bind HA2_C AAA_22 AAA_19 KH_1 zf-C3HC4_2 ResIII zf-RING_UBOX Helicase_RecD RsgA_GTPase AAA_30 HA2_N AAA_29 ABC_tran SLFN-g3_helicase ATPase
Other DBs
NCBI-GeneID: 102585171
NCBI-ProteinID: XP_006353197
Position
Un
AA seq 1708 aa
MQKRVSCPVTQSGYGFHRNSPEFSKRKIPNFTIQLRATPMNWKLNWQHLNNLIAKLPFTP
ENPSVVDSNFIVGTLSYVEWYQTLEVMVKLWELRLSGGHCCNPILKAKVELPSDREELNE
RLKGVFLEKLNRLINGVLVQTWQKKLGFVIDEIEKISMLLKKPNRVGVYQELWKKKKGIE
GERDLISLRIDEFKNGIKCIIDYLEDSKNYEDFKVFDFGEVIDWNRIHFIMMRECRRLDD
GLPIYGFRQQILQQILSQQVTVLVGETGSGKSTQLVQFLADSGITGTGSIVCTQPRKLAA
NSLASRVREESQECYDDCSISCNPPHSSCQQFDSKVIFMTDHCLLQHYMGDKTLSNISCI
IVDEAHERSLNTDLLLALIKKLLHQRFDLRLIIMSATVDANQLAGYFFGCGTFHVAGRTF
PVDIKYVPCEDDAHHAVGAIASYVHDVIKMVTEIDRTEGAGAILAFLTSQSEVEWACEQF
KAPLAIALPLHGKLSYDDQNRVFLSYPGKRKVIFTTNLAETSLTIPGVKYVVDSGMVKES
RFEPGSGMNVLRICSVSQSSANQRAGRAGRTEPGKCFRLYSQSDFEDMPRHQEPEIRKVH
LGVAVLRILALGIKNVQDFDFVDAPKPKAIEMATRNLVQLGAVTQRDDASYELTAEGLKL
VKLGIEPRLGKMILSCFDQRLGKEGVALAAVMANSSSIFCRVGSEGDKLKSDCRKVQFCH
PSGDLFTLLSVYREWEIVPREKKNSWCWDNSINAKSMRRCHETVLEMEACLQNELNMILA
SYWRWHPQVHNKCDEVLQSIILSSLAENVAVYSGYDQLGYEVALSGKCVQLHPSCSLLNF
GQRPRWVVFGDVLASANEYLVCVTAFEFSSLVSLTPAPLFDFLKMDALKLEKKVLTGFGV
VLLKRFCGKSNSSINNLVSRIRTSYKDERIGIQVNVDENEVLLYASSRDMESVTFQVNDA
LEYESKLLRNECLEKCLFNGGSAASASVALFGAGAVIKHLELEKRCLTVDIFPSNGNAID
DKELLMCLERATSGNICMVHKYSGMGQDKEENKWGTVKFLTPDAAEQATFLNKVEFNGGF
LKMVPSRSIHSSDQKMFRSVLKAKVSWPRRYSKGVGFLRCDPMDVPLILDDISDLMIGGN
VIRCEASDKNPDNIVIARLDRDIAETEILEVLRATTNRRILDFFLVRGDSVENPPIATCE
EALRKEISPFMPKKVPFVNSVRVQVFQPKLTEYFAKAAIIFDGSLHLEAAKALEQIDGMV
LPGCLPWQKIRCERLFHSSVSCPAAVYHVIRNQLDSLLASLRRRKVGKCELQRNDNGSCT
VRISATATKVVADLRRPLEQLMKGKIVDHVDITPKVVQLLFSREGSNIMRTIQRETGTYI
YFDKHSLLVSIFGSLDNVDRAQQRFIGSLLALHENKQLEVHLRGGLLPHDLMKRVVQTFG
PDLSALKEKVPGAEFSLNTKRHCIYINGTKDMKQSVEDIISEIAQRSFPIQTTGDDADCP
VCLCELEDPYKLEACCHVFCRTCLLEQCESAIKSREGFPMCCLHQGCAEPILLADLKSLL
SIEKLEELFRASLGAFVAANGSTYRFCPSPDCPSVYRIADPDMVGAPFACGACYVETCTS
CHLEYHPYLSCETYQKVKDDPDCSLEEWSKGKDNVKKCPVCRFTIEKVDGCNHIECKCGK
HVCWVCLLFFDTSDNCYDHLRSVHRSIT
NT seq 5127 nt   +upstreamnt  +downstreamnt
atgcaaaaacgggtttcatgcccggtgacccaatcgggatatgggtttcaccggaattcg
ccggaattttcgaaacgaaaaatacccaatttcacaatccaactccgggcaactccgatg
aactggaaactgaactggcaacacctgaacaacttgatagcaaaattacccttcacccca
gaaaacccatcagttgtagactcaaattttatcgtcggaaccctatcgtatgttgaatgg
tatcaaacattagaagttatggtgaagttatgggagttaaggttaagtggtgggcattgt
tgtaatccaattttaaaagcaaaagttgaacttccatctgatagagaagagttgaatgag
agattaaaaggggttttcttggagaaattgaataggttaatcaatggggttttagtacaa
acatggcagaaaaaattgggttttgtgattgatgagattgagaaaatttctatgttgttg
aagaaacctaacagggttggtgtttaccaggagctgtggaagaagaaaaagggtattgaa
ggtgaaagagatttgatatcattaaggattgatgaattcaagaatgggattaaatgtatc
attgattatttggaggattcgaagaattatgaggattttaaggtgtttgattttggtgaa
gtgattgattggaatagaattcattttatcatgatgagagaatgtagaaggcttgatgat
ggattaccaatttatggttttaggcagcagattctgcaacaaattctttctcaacaggtg
actgttttggttggggagactggatccggaaagagtacacaactagtgcaattccttgct
gattcaggaataactggcactggttctatagtttgcactcagcctcgaaaacttgctgcc
aattctttagcaagtagagttagagaggaaagccaggagtgctatgatgattgctcgatc
tcctgtaatccaccacattcatcctgtcagcagtttgattcaaaggtgatttttatgaca
gatcactgcctattacagcactatatgggcgacaagactttgtccaacatttcatgcatc
atagtcgatgaggcacatgaaagaagccttaacaccgatcttcttttagcgttgattaag
aaactacttcatcagaggtttgatctgaggcttattattatgtctgccacagttgatgca
aaccagcttgcaggctacttctttggttgtggaactttccatgtggcgggtaggactttt
ccggttgatataaagtatgttccctgtgaagatgatgcccatcatgctgtaggtgcaatt
gcctcttatgtccacgatgttatcaagatggtgactgagatcgatagaactgagggagcg
ggagctattttagccttcttgacatctcagagtgaagttgagtgggcttgtgagcagttt
aaagcaccactggccattgctttacctttgcatggcaagttatcctatgatgaccaaaac
cgagtgtttctctcctatccagggaagagaaaggttatattcaccaccaatctagctgag
acatcactgacaatccctggtgtcaaatatgttgttgattctggcatggttaaagaaagc
aggtttgaacctggctctggcatgaatgttctcaggatatgcagtgtgagccaaagttct
gctaaccaaagagccggtcgtgcagggagaactgaacctggaaagtgtttcaggctgtac
tctcaaagtgattttgaggatatgcctcgtcatcaggaacctgaaattcggaaagttcat
cttggtgttgcagtgctgaggattcttgctttaggtatcaagaatgtgcaggattttgat
tttgttgatgcaccgaaacccaaagctattgagatggccacccgaaatctggttcaacta
ggagctgttacacaaagagatgatgcttcatatgaattaactgcagaaggactaaaactg
gtgaagttgggtattgaacctcggttgggaaaaatgatcctcagttgctttgatcaacgt
ttgggtaaagaaggtgttgcgcttgctgccgttatggcaaattccagcagcattttctgt
agggttggttctgaaggagacaaactaaaatctgattgccgcaaggtgcaattttgccat
ccaagtggggacctctttactttactatctgtttacagggaatgggagattgtgcctagg
gaaaagaagaatagctggtgttgggataatagtatcaatgccaaatccatgagaagatgc
catgagacagtgctggaaatggaagcctgccttcagaatgagctaaatatgatcttagcc
agttactggcgctggcatcctcaagtgcataacaagtgtgacgaagtattgcaaagtata
attctttcttcacttgcggaaaatgttgctgtgtactcaggttatgatcagcttggttat
gaggttgcgctatctgggaagtgtgtccaactacatccttcctgttcgcttttgaatttc
ggccaacgaccacgttgggtagtctttggggatgtccttgcatcagctaacgagtatctg
gtctgtgttactgcatttgagtttagttctcttgttagcctcactcctgctcctttgttt
gattttctgaagatggatgcactaaagttagaaaagaaggttttgacaggctttggagtc
gtgctactcaaaagattttgtggaaaatctaacagtagcattaacaatcttgtctcgcgc
attagaacttcttataaggatgaaaggataggcattcaagttaatgttgatgagaatgag
gttcttttatatgcttcttcgagagacatggagagtgttacattccaggtaaatgatgct
ctagagtatgaaagtaagctgttgcggaacgaatgcttagagaaatgtctattcaatgga
ggatcagcagcttcggcctctgttgctctcttcggagctggtgctgtgataaagcatttg
gagcttgagaagagatgtttgactgtggacatatttccgtcaaatggaaatgccattgat
gacaaggaattgctgatgtgtttggagagagccacatctggtaatatttgtatggtgcac
aagtactctggaatgggccaggacaaagaggagaacaagtggggcacagtaaaatttctt
acccctgatgctgcagaacaggctacattcttaaataaagtggaatttaatggtggcttt
ctgaaaatggttccatccaggagcatacacagtagtgatcaaaagatgtttcgctcagtt
ctcaaagctaaagtttcttggcctcgtaggtacagtaaaggagtaggctttctgagatgc
gaccctatggatgttcctttaattttagatgacatctctgatctcatgattggtggaaat
gtcatccgttgtgaggcaagcgataagaaccctgacaacatagtcattgctagacttgat
agggacattgctgagacagagatacttgaggtgttaagggcaacaacaaataggagaatt
ctggatttcttcttggtgagaggagattctgtagaaaatcctcccatagctacttgtgaa
gaagcacttcggaaagaaatatctcccttcatgcctaaaaaggttccgtttgttaactct
gttcgtgtccaggtcttccagccgaaactaactgagtatttcgcaaaagcagctataata
tttgatggatctcttcatcttgaagcagccaaggccttggagcaaatcgacggcatggtt
ttgcctggatgccttccctggcagaaaataagatgtgagcgactgtttcacagctctgtt
tcctgtcctgcagcagtttatcatgtcatcaggaaccagttggattctttacttgctagc
ctccgccgaagaaaggttgggaaatgcgagctacagagaaatgataacggttcctgtaca
gttaggatatctgccactgccaccaaagttgtggcagatttgagaagaccactggagcaa
cttatgaaaggcaagattgtagatcatgtggatattactccgaaggttgttcaacttctg
ttctctcgagaaggaagcaacattatgaggacaattcaacgggagacaggaacctatatt
tattttgacaagcatagcttgcttgttagtatctttggttctttagacaatgttgatagg
gctcaacagagatttattggttcccttctggcgctacatgaaaataaacaacttgaggtg
catcttcgtggaggacttttacctcatgacctgatgaaaagagttgttcagacatttgga
ccagaccttagtgcacttaaagaaaaggtgcctggggcagagttctctctgaacacaaag
cgccattgcatctatatcaatggtactaaagatatgaagcaaagcgttgaggacataatc
tctgaaatcgctcaaagaagttttccaattcaaacgacaggagatgatgctgactgtcct
gtttgcttgtgtgaactggaggatccttataaacttgaagcttgctgccatgtattctgt
cggacatgcttgctagagcagtgtgagtctgcaatcaaaagccgggaaggtttccccatg
tgctgtcttcatcaaggttgtgcggaacccatcttgcttgctgatttgaagtctctattg
tcaattgagaagttggaagaacttttcagggcttctttgggggcttttgtggcagccaat
ggtagtacctaccgcttttgcccctcaccagattgcccttcagtttatcgcattgcagat
cccgatatggttggtgcaccttttgcctgtggtgcatgctatgtggagacatgtacgagt
tgccacctggagtatcatccttacctctcctgtgagacgtaccagaaggttaaagacgac
ccagattgctctctagaggaatggtccaaggggaaagacaatgtaaagaaatgtcccgtt
tgcagatttacaattgagaaggtggatggctgcaatcatatcgagtgtaagtgtgggaaa
catgtttgctgggtttgcttgctcttctttgacaccagtgataattgctatgatcatttg
aggtctgttcaccggtccattacatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (19)   
   Pfam (19)   
All databases (30)   

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