KEGG   Streptomyces xiamenensis: SXIM_17410
Entry
SXIM_17410        CDS       T03904                                 
Name
(GenBank) RecD/TraA family helicase
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
sxi  Streptomyces xiamenensis
Pathway
sxi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sxi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    SXIM_17410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sxi03400]
    SXIM_17410
Enzymes [BR:sxi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     SXIM_17410
DNA repair and recombination proteins [BR:sxi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     SXIM_17410
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 UvrD_C_2 SH3_13 HHH_5 Viral_helicase1 AAA_11 AAA_22 AAA_16 Helicase_RecD PhoH PIF1 HHH_2 DEAD AAA nSTAND3 HTH_IclR UvrD_C TrwB_AAD_bind
Other DBs
NCBI-ProteinID: AKG43125
UniProt: A0A0F7FTS3
Position
complement(1877385..1879595)
AA seq 736 aa
MSSHSAVLEGVLERITYANEENGYTVARVDTGGGGGELLTVVGALLGAQVGESLRMRGRW
GSHPQYGRQFTVENYTTVLPATVQGIRRYLGSGLIKGIGPRTAERIVEHFGVATLEVIEA
DAGRLIEVPGLGPKRTRLIAAAWVEQKAIKEVMVFLQSVEVSTSIAVRIYKKYGDASISV
VRNQPYRLAADVWGIGFLTADRIARAVGIPHDSPERVRAGLRHALSLASDQGHCFLPEER
LIAEAVKLLQVDTGLVIDCLGELAQDPEGVVREPVPDPEDPHGTVMAVYLPPFHRAELSL
AGQVRRLLRAGEDRLAAFAGVDWGRALGWLAERTRAELAPEQEAAVRLALTEKVAVLTGG
PGCGKSFTVRSVVELARARRAKVVLAAPTGRAAKRLAELTGARASTVHRLLELKPGGDAA
YDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLLVGDVDQLPSVGAGEVLRDLL
ADGSPVPAVRLTRIFRQAQQSGVVTNAHRINAGRPPLTRGLADFFLFAEEDTEAAGRLTV
DVAARRIPARFGLDPRRDVQVLTPMHRGPAGAGALNGLLQEAVTPAGPGLPEKRFGGRIF
RVGDKVTQIRNNYEKGANGVFNGTVGVVRDLDADEQRLVVRTDEDEDVEYEFGELDELAH
AYAVTIHRSQGSEYPCVVVPVTTSAWMMLQRNLLYTAVTRAKRLVVLVGSRRALDQAVRS
VSAGRRFTGLDMRLAG
NT seq 2211 nt   +upstreamnt  +downstreamnt
atgtcgtcgcacagcgcggtgctcgagggggtcctggagcgcatcacctacgccaacgag
gagaacgggtacaccgtcgcccgggtggacaccgggggcggtggcggtgaactgctcacc
gtcgtcggggcgttgctcggggcccaggtgggggagtcgctgcggatgcgcggccgctgg
ggctcgcacccgcagtacggacggcagttcacggtggagaactacacgacggtgctgccc
gccaccgtccagggcatccggcgctacctgggctcggggctgatcaagggcatcgggccc
aggaccgccgagcggatcgtcgagcacttcggggtggccaccctggaggtcatcgaggcg
gacgcgggccggctgatcgaggtgccggggctcggccccaagcgcacccggctgatcgcc
gcggcgtgggtggagcagaaggccatcaaggaggtcatggtcttcctgcagagcgtggag
gtgtccacctccatcgcggtgcggatctacaagaagtacggggacgcctcgatctccgtc
gtacggaaccagccctaccggctggccgccgacgtgtgggggatcggcttcctgaccgcc
gaccgcatcgcgcgggcggtcggcatcccgcacgacagccccgagcgggtgcgggccggg
ctgcgccacgcgctgtccctggcgagcgaccaggggcactgcttcctgcccgaggagcgg
ctgatcgcggaggcggtgaagctgctccaggtggacaccgggctggtcatcgactgcctg
ggggagctggcgcaggacccggagggggtggtgcgcgagccggtgccggacccggaggat
ccgcacggcaccgtgatggcggtgtacctgccgcccttccaccgggccgagctgtcgctg
gccggtcaggtgcggcggctgctgcgggccggggaggaccggctggcggccttcgccggg
gtggactggggccgggcgctgggctggctggcggagcgcacccgggcggagctggcgccc
gagcaggaggcggcggtgcgtctggcgctgaccgagaaggtggcggtgctgaccggcggc
ccggggtgcgggaagtcgttcacggtgcgctcggtggtggagctggcgcgggcgcggcgg
gcgaaggtggtgctggcggcgccgacggggcgggcggcgaagcggctggcggagctgacg
ggggccagggcgtccacggtgcaccggctgctggagctgaagccgggcggcgacgcggcg
tacgaccgcgaccggccgctggacgcggatctggtggtggtggacgaggcgtcgatgctg
gatctgctgctggccaacaagctggtgaaggcggtgccgccgggcgcgcacctgctgctg
gtgggggatgtggaccagctgccgtcggtgggcgcgggcgaggtgctgcgagatctgctg
gcggacggctccccggtgcccgcggtccggctgaccaggatcttccggcaggcgcagcag
tccggggtggtgacgaacgcgcaccgcatcaacgccggccggccgccgctgacgcggggg
ctcgcggacttcttcctgttcgccgaggaggacacggaggcggccgggcggctgacggtg
gacgtggcggcgcgccggattccggcgcggttcgggctcgatccgcgccgggacgtgcag
gtgctcaccccgatgcaccgcggtccggccggggcgggggcgctgaacgggctgctccag
gaggcggtgaccccggccgggcccgggctgccggagaagcggttcgggggccggatcttc
cgggtgggcgacaaggtcacccagatccgcaacaactacgagaagggcgccaacggcgtc
ttcaacggcacggtcggggtggtgcgcgacctggacgcggacgagcagcggctggtggtg
cgcaccgacgaggacgaggacgtggagtacgagttcggtgagctggacgagctggcgcac
gcgtacgcggtgacgatccaccgttcgcagggcagcgagtatccgtgtgtggtcgtcccg
gtgacgacgagcgcctggatgatgctccagcgcaatctgctgtacacggcggtgacgcgg
gcgaagcggctggtggtgctggtgggttcgcggcgcgccctggatcaggcggtacgcagc
gtctcggcggggcgccggttcacggggctcgacatgcggctcgcggggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (20)   
   Pfam (20)   
All databases (30)   

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