KEGG   Thiobacillus denitrificans: Tbd_2781
Entry
Tbd_2781          CDS       T00275                                 
Name
(GenBank) Primosomal protein n
  KO
K04066  primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
Organism
tbd  Thiobacillus denitrificans
Pathway
tbd03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:tbd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Tbd_2781
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tbd03400]
    Tbd_2781
Enzymes [BR:tbd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Tbd_2781
DNA repair and recombination proteins [BR:tbd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Tbd_2781
SSDB
Motif
Pfam: PriA_3primeBD PriA_C DEAD PriA_CRR ResIII Helicase_C zinc-ribbons_6 HypA AAA_30 SLFN-g3_helicase Viral_helicase1 TrwB_AAD_bind zf-IS66 zf-CHY
Other DBs
NCBI-ProteinID: AAZ98734
UniProt: Q3SF81
Position
2861158..2863317
AA seq 719 aa
MTPIVQVGLDTPLDRLFDYSAGEAAADLAPGRLVEVPFGRTRQVGVVLGSLAETAVDGIK
LRTILRVLDDRPALAPEVLRLARFCADYYHYPLGAVLLATLPPRLKNATPYLADTPWLVV
TALGRAEGPAPRARAQHALLEALREAPQARAYLRAIKQGRHAAALVAAGWAEWTRLPPEA
EPPPEGPRPAPATAEQQAALDVLLPTLGEFAVHLVHGVTGSGKTELYLRVIDAVLAAGRQ
ALVLIPEIALTPQLEGHFRARFPGRRFATLHSGLAEAARTENWLAAADCDVLLGTRLAVF
APLPRLGLIVVDEEHDTSFKQQDGLRYSARDVAIARGKQAGVPVLLGSATPSLESYAQAR
SGRYRLLELRQRAIAAARLPEIELVDLRHVPQENGLTAPALAALHATLARGEQSLVFLNR
RGYAPALYCPSCAWVSPCPHCSARLVLHRGAQRLKCHHCGFETRIPSACPDCGEPDLKPL
GQGTQRVEETLATHLPGARIRRIDRDTMRPRAWAELGTAVHGGEVDVLVGTQMLAKGHDF
PNVTLALILDTDGALYSPDFRATERLFAQLMQVAGRAGRAEKPGRVLIQTAFPDHPLFRH
LQRHDYAAYARELLAERKQLELPPYTRQILVRAEATTMDAALAFLRRAAALAPDAPGVSV
FAATPAPMARVAKLERAQLLIQSPSRAALQAFVRDWRPRLETIRPRPARWSLDVDPLVF
NT seq 2160 nt   +upstreamnt  +downstreamnt
atgactccgatcgtccaggttggactcgacacgccgcttgaccgtctgttcgattacagc
gcgggcgaagccgcggcggacctcgcccccggccgcctcgtcgaagtacccttcggccgc
acccggcaggtcggcgtggtgctcggcagccttgctgagacggccgtcgacgggatcaag
ctgaggacaatccttcgcgtcctcgacgaccgccccgcgctcgcgccggaagtgctgcgc
ttggcacggttctgcgccgactactaccactatccgctgggggcggtcctgctcgcgacc
cttcccccccgcctgaagaacgcgaccccctacctcgccgacacgccgtggctcgtcgtc
accgcgcttggccgcgccgagggacccgcgccgagggcccgcgcgcagcatgccctgctc
gaagccttgcgcgaggcgccgcaggcgcgtgcatacctgcgcgccatcaagcagggacgc
cacgcggccgcgctcgtcgccgcgggctgggccgaatggacccgcctgccgcccgaggcc
gaacccccgccggaaggccctcgcccggcaccggcaacggccgagcagcaggccgcgctc
gatgtgttgctgccgacgctcggcgaattcgccgtgcatctcgtgcacggcgtgaccggc
agcggcaagaccgaactctatctgcgcgtcatcgacgccgtgctcgccgccggtcggcag
gcgctggtactgattccggaaatcgcgctgacgccccagctcgaaggacacttccgcgcc
cgctttccgggccggcgcttcgcgaccctgcacagcgggcttgccgaggccgcgcgcacc
gaaaactggctcgccgcagccgactgcgacgtcctgctcggcacccgcctcgccgtattc
gcgccgctgccgcggctgggcctgatcgtcgtcgacgaagaacacgacacctcattcaag
cagcaggacggcttgcgctattcggcgcgcgacgtcgcgatcgcccgcggcaagcaggcc
ggcgttccggtgctgctcgggtcggccacgccatcgctcgaaagctacgcgcaggcccgc
agcggccgctaccggctgctcgaactcaggcagcgcgcgatcgccgccgcgcgcctgccc
gagatcgagctcgtcgacctgcgtcacgttccgcaggaaaacggcctgaccgcgccggcc
ctcgcggccctgcacgcgacgctcgcacgcggcgagcagagcctggtcttcctcaatcgc
cgcggctatgcgcccgcgctgtactgtccgagctgcgcctgggtctcgccctgcccgcac
tgctcggcacggctggtcctgcaccgcggcgcgcagcggctgaaatgccatcactgcggc
ttcgagacacggatcccgagcgcatgcccggactgcggcgagcccgacctgaagccgctc
gggcagggcactcagcgcgtcgaggaaacgctcgcgacgcacctgccgggtgcgcgcatc
cgccgcatcgaccgcgacacgatgcgcccgcgcgcctgggccgagctcggcacggccgtg
cacggcggcgaagtcgacgtgctcgtcggcacgcagatgctggccaagggccacgacttc
ccgaacgtgacgctggcgctgatactcgacaccgacggcgcgctctacagccccgacttt
cgggcgacggaacggcttttcgcccaactcatgcaggtcgccgggcgcgcgggccgcgcg
gaaaaacccggccgcgtgctgatccagacggcgtttcccgaccacccgctgttccgtcac
ctgcagcgacacgactacgcggcctacgcacgcgaactgctcgccgaacgcaaacagctc
gaactgcccccgtacacgcggcagatcctcgtgcgcgccgaagcgaccacgatggacgcc
gcgctcgccttcctgcggcgcgcggcggcgctcgcccccgatgcgcccggggtcagcgtg
ttcgctgcgacgcccgcgccgatggcccgcgttgccaagctcgaacgcgcgcaacttctg
atccagtcgccctcacgcgcggcgctgcaggccttcgtgcgggactggcggccgcgtctc
gaaacgatccggccgcgccccgcgcgctggtcgctcgacgtcgacccgctcgtgttttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (44)   

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