KEGG   Trypanosoma brucei brucei: Tb927.3.3280
Entry
Tb927.3.3280      CDS       T01013                                 
Name
(RefSeq) katanin, putative
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
tbr  Trypanosoma brucei brucei
Pathway
tbr03250  Viral life cycle - HIV-1
tbr04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:tbr00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    Tb927.3.3280
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    Tb927.3.3280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:tbr04131]
    Tb927.3.3280
   03400 DNA repair and recombination proteins [BR:tbr03400]
    Tb927.3.3280
Membrane trafficking [BR:tbr04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    Tb927.3.3280
DNA repair and recombination proteins [BR:tbr03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    Tb927.3.3280
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 AAA_5 AAA_22 AAA_2 AAA_14 USP8_dimer RuvB_N DUF815 AAA_24 Viral_helicase1 TIP49 AAA_25 Ribosomal_60s AAA_33 AAA_18 AAA_17 IstB_IS21 RNA_helicase AAA_7 Parvo_NS1 AAA_28 Mg_chelatase nSTAND3 PPV_E1_C bpMoxR Sigma54_activat PhoH Bac_DnaA
Other DBs
NCBI-GeneID: 3656267
NCBI-ProteinID: XP_843921
UniProt: Q57V58
Position
3:complement(843271..844605)
AA seq 444 aa
MSVDFTSKAVELFKKAARHDEQGEYREAYHWYMEAIEVFITAIKYETKNVTKRDLLRKKT
MEITERAEKIKEYLENCDANRSGGQASSAVGQKTASSAKKAKEDEEDDKRLKSGLDNAII
RVKPNVQWSQIAGLEAAKEALKEAVILPVRFPQLFTGNRKPWKGILLYGPPGTGKSYLAK
AVATEADGTFLSVSSADLMSRWLGDSEKLVRNLFEKAREAYREGGKPAIIFIDEIDSLCS
ARSDGENDASRRIKTEFLVQMQGVGHDDEGVLVLGATNIPWALDSAVRRRFERRIYIPLP
QAHARCQMIKIHLGDTQHSLTDEDCNALAKMTEMYSGSDISIVVRNAMMECVRSVQLATH
FKRVTGPDPKDPTRTVNDRLVPCSPGDPNAIPMTMNDITESEKLMPLPVTMQDFIKALRT
ARPSVSSEDITQHVKFTEEFGQEG
NT seq 1335 nt   +upstreamnt  +downstreamnt
atgtccgttgatttcacgtccaaggcagtggaattattcaagaaagctgccaggcacgat
gagcagggggagtacagggaagcataccactggtacatggaggcgattgaggtttttatt
actgccattaagtacgagaccaagaacgtgacaaagagggatttgctaagaaagaaaacg
atggagataacggagcgggcagaaaagatcaaagaatacctcgaaaactgcgatgcaaac
cgtagtggcggtcaagcttccagtgctgtggggcagaagacagcttcatccgcgaagaag
gccaaggaggatgaagaagacgataagcggctgaaaagtgggttagataatgcgattatc
cgtgtgaagcccaacgtacagtggtctcagattgcagggttggaggctgcaaaggaggct
ttgaaagaggctgttattctccccgttcgtttcccacaactgttcactggaaacagaaaa
ccatggaagggaattttattgtatggtccaccaggtacagggaagtcgtatcttgcaaag
gctgtggcgacagaagcagacggcacattcttgagcgttagtagtgcagatttgatgtcc
cgctggctgggtgattcggaaaaattggtgcggaacctcttcgagaaggcccgtgaggcg
tacagggagggggggaaacccgctattatttttattgatgagattgactctctttgctca
gcgaggtctgatggtgagaatgacgcctcccgtcgtatcaaaacggaattccttgtacag
atgcaaggagtaggccacgacgacgaaggtgtcttagtgctgggcgcaacgaatatacca
tgggcccttgacagtgcggtacggcgacgcttcgagcgccgtatatacataccgcttccg
caagcccatgcccgatgtcaaatgattaagattcatctcggtgacactcagcattccctc
acggatgaggactgcaacgctttggcaaaaatgacagaaatgtactcgggcagtgatatc
agcatcgtcgtgcggaatgccatgatggagtgcgttcggtcagtgcagttagcgactcac
ttcaaacgtgtaacgggaccggacccgaaggatccaacgcggaccgtcaacgatcggctt
gtgccgtgctcgccgggtgaccccaatgccattcccatgacaatgaatgatattacggag
tctgagaaactgatgccgcttccagtgaccatgcaggactttatcaaggcactgcgcaca
gcccgtccttccgtatcgagtgaagacattactcagcatgttaaattcactgaagagttt
gggcaggagggataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (32)   
   Pfam (32)   
All databases (79)   

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