KEGG   Vitreoscilla sp. C1: ADP71_03760
Entry
ADP71_03760       CDS       T05336                                 
Name
(GenBank) subunit alpha of exodeoxyribonuclease V
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
vit  Vitreoscilla sp. C1
Pathway
vit03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    ADP71_03760
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vit03400]
    ADP71_03760
Enzymes [BR:vit01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     ADP71_03760
DNA repair and recombination proteins [BR:vit03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     ADP71_03760
SSDB
Motif
Pfam: AAA_19 AAA_30 UvrD_C_2 AAA_11 Viral_helicase1 UvrD-helicase SH3_13 Helicase_RecD AAA_22 PhoH DEAD AAA_5 SLFN-g3_helicase nSTAND3 Flavi_DEAD NACHT NTPase_1 SRP54 AAA_16 UvrD_C T2SSE AAA_24 CbiA AAA_28 DO-GTPase2 AAA_7
Other DBs
NCBI-ProteinID: AUZ04178
Position
300507..302270
AA seq 587 aa
MEQVAQFQAQSTYQNLRKYAPEAADIVQPWLERLFVAFHDGDSCIVLPKHERSRLQDAAP
IVGEAHKMDGVYQASTPLVAFAQGQLALGRVWQLEAEIAQHLQRLSRTIIPTQSLADLLN
RLFDEPSSWQQKQAAALACLNQLAIITGGPGTGKTTTVAKLLCLLSDGKVEQPRIALAAP
TGKAAARMTESLRGSLQRLQDHALISAATAQNLLNLEGKTLHRLLGMMPPKMLPRYHAKH
TLPYDIIVIDETSMLDSSMLRHLLAAVDNDTRLILLGDADQLPPVGMGDLLSLLPAKTQV
LPEQKALLDAWGLQVDWDSADEVPMLAAQTARLNISHRFKADSGIGQLAGAVLRQEGERL
QDLFEQFADIEMRPVPEYTRMLAWHLWLAQQEYWHAVDDGNAAAVFAVWLKRMVLTVRRH
DAEQINLALREILKQQNRWDESHGFWYHGQAIMIVRNHAEMGLFNGDVGVVLRDAKGRLQ
AYFPTFDGMREVALSRLPQHEDAFAMTVHKSQGSEFSEIWLLPPLGAAEHAEDYDCALLY
TAITRAKNKLVYWGEVASLQAASERVVHRQTVLAYLLSRSSQQKSVL
NT seq 1764 nt   +upstreamnt  +downstreamnt
atggagcaagtagcacagtttcaagcgcagtcgacttatcaaaatttgcgcaaatacgcg
ccagaagcggcagacattgtacagccgtggttggagcgtttgtttgtggcatttcacgat
ggcgattcttgcattgttttgcccaaacacgagcgttctcgtttacaggacgctgctccc
atcgtgggtgaagcgcacaaaatggatggtgtttaccaagcatctacgcccttggtggca
tttgctcaaggtcaattggctttggggcgggtgtggcaattggaggcggagattgcgcaa
catttgcaacgcttgagtcgcactatcattccaacacagtctttggcggatttgctaaac
cgtttgtttgatgagcctagtagttggcaacaaaaacaagctgcggctttggcatgtttg
aaccaattggcgattattacaggcggcccgggcacaggcaaaaccaccacggttgccaag
cttttgtgtttgttgtccgatggcaaggtggaacagccacgcattgctttggcagcgccc
acaggtaaagcggcggcacgcatgaccgagtctttgcgtggtagtttgcaacgattgcaa
gaccatgcactgatttctgcggctactgcgcaaaatttgctcaatttagaaggcaaaacc
ttgcaccgtttgctaggaatgatgccgcctaaaatgttgccgcgctaccatgccaaacac
actttgccttatgacattattgtgattgatgaaacatcgatgttagacagttcgatgttg
cgccatttattggctgctgttgataatgacacccgcctgattttactaggtgatgccgat
caattgccacctgtgggcatgggggatttgttgtcattattgccagctaagacgcaagtg
ttgcctgagcaaaaagccttattggatgcatggggtttacaggtcgattgggacagtgct
gacgaggtgcctatgttggcagcacaaactgcccgtttgaatatcagccaccgtttcaaa
gccgatagcggcatcgggcaattggcaggagctgtgttgcggcaagagggtgagcgtttg
caagatttgtttgaacaatttgccgatattgagatgcgtcctgtacctgaatacactcgt
atgttggcatggcatttgtggctggcacagcaagaatattggcatgccgtcgacgatggc
aatgctgctgcggtatttgcggtttggctcaagcgcatggttttgacggtgcgtcgtcat
gatgctgaacaaatcaatttggccttgcgtgagattttgaaacagcaaaatcgttgggat
gaatcgcatggtttttggtatcacggtcaagcgattatgattgtccgtaaccacgctgaa
atgggcttgttcaatggcgatgtgggcgtggtattgcgcgatgcaaaaggccgtttgcaa
gcgtatttcccaactttcgatggcatgcgtgaagtggcattaagccgtttgccgcaacac
gaagatgcttttgcaatgacggtacacaaaagccaaggctcggaattttctgaaatatgg
ttgttgccgccattgggtgctgccgaacatgccgaagactacgattgtgctttgctgtat
acggccattacccgtgcgaaaaacaaattggtgtattggggtgaagttgccagcttacag
gccgctagtgagcgtgtggtacaccgtcaaaccgttttggcttatttattaagccgttct
tcacaacagaaatccgttttatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (26)   
   Pfam (26)   
All databases (35)   

Download RDF
DBGET integrated database retrieval system