ID or terms query


Vibrio_cholerae.2978 (12 sequences)

OC Root 2nd 3rd 4th 5th 6th PC Gene/Definition
OC.312639 Bacteria.402840 Proteobacteria.345672 Gammaproteobacteria.82274 Vibrio.3103 Vibrio_cholerae.2978 vch.2629 vch:VCA0104 ribosomal large subunit pseudouridine synthase A; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
OC.312639 Bacteria.402840 Proteobacteria.345672 Gammaproteobacteria.82274 Vibrio.3103 Vibrio_cholerae.2978 vcf.111 vcf:IR04_00455 pseudouridine synthase; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
OC.312639 Bacteria.402840 Proteobacteria.345672 Gammaproteobacteria.82274 Vibrio.3103 Vibrio_cholerae.2978 vcs.2721 vcs:MS6_A0087 ribosomal large subunit pseudouridine synthase A; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
OC.312639 Bacteria.402840 Proteobacteria.345672 Gammaproteobacteria.82274 Vibrio.3103 Vibrio_cholerae.2978 vce.3659 vce:Vch1786_II0899 ribosomal large subunit pseudouridine synthase A; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
OC.312639 Bacteria.402840 Proteobacteria.345672 Gammaproteobacteria.82274 Vibrio.3103 Vibrio_cholerae.2978 vcq.800 vcq:EN18_04245 pseudouridine synthase; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
OC.312639 Bacteria.402840 Proteobacteria.345672 Gammaproteobacteria.82274 Vibrio.3103 Vibrio_cholerae.2978 vcj.185 vcj:VCD_000140 pseudouridylate synthase LSU rRNA-specific; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
OC.312639 Bacteria.402840 Proteobacteria.345672 Gammaproteobacteria.82274 Vibrio.3103 Vibrio_cholerae.2978 vci.2737 vci:O3Y_13958 ribosomal large subunit pseudouridine synthase A; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
OC.312639 Bacteria.402840 Proteobacteria.345672 Gammaproteobacteria.82274 Vibrio.3103 Vibrio_cholerae.2978 vcr.2859 vcr:VC395_A0097 rluA-2; ribosomal large subunit pseudouridine synthase A; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
OC.312639 Bacteria.402840 Proteobacteria.345672 Gammaproteobacteria.82274 Vibrio.3103 Vibrio_cholerae.2978 vcm.2763 vcm:VCM66_A0102 rluA-2; ribosomal large subunit pseudouridine synthase A; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
OC.312639 Bacteria.402840 Proteobacteria.345672 Gammaproteobacteria.82274 Vibrio.3103 Vibrio_cholerae.2978 vcl.2414 vcl:VCLMA_B0092 Pseudouridylate synthase, 23S RNA-specific; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
OC.312639 Bacteria.402840 Proteobacteria.345672 Gammaproteobacteria.82274 Vibrio.3103 Vibrio_cholerae.2978 vcx.850 vcx:VAA049_1804 RNA pseudouridylate synthase family protein; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
OC.312639 Bacteria.402840 Proteobacteria.345672 Gammaproteobacteria.82274 Vibrio.3103 Vibrio_cholerae.2978 vcz.3470 vcz:VAB027_925 RNA pseudouridylate synthase family protein; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]

( plain text of OC.312639 )

Refinement of cluster

OC depth

KOs in cluster

    K06177 (12) tRNA pseudouridine32 synthase / 23S rRNA...

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Organism selection


Distribution of taxonomic categories

sequence organism Vibrio KO

Neighbor clusters

OC.312541 (39) OC.312542 (293) OC.312543 (787) OC.312544-312569 OC.312570-312572 OC.312573-312574 OC.312575 (1) OC.312576-312634 OC.312635 (467) OC.312636 (46) OC.312637 (20) OC.312638 (113) OC.312639 (244) OC.312640 (1305) OC.312641 (24) OC.312642 (1384) OC.312643 (7) OC.312644 (2) OC.312645 (5) OC.312646-312654 OC.312655-312661 OC.312475-312540 OC.312646-312663