Rubus idaeus

Rubus idaeus

Scientific Name	Rubus idaeus [TAX:32247]
Lineage	cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Known viruses (8)

Scientific Name	Arabis mosaic virus [TAX:12271]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus arabis
RefSeq	NC_006056 Arabis mosaic virus RNA 2, complete sequence. NC_006057 Arabis mosaic virus RNA 1, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_006056 NC_006057 KEGG GENOME: T40289 ViralZone: genus, family Plant Viruses Online: 312 Descriptions of Plant Viruses: 16

Scientific Name	Emaravirus idaeobati [TAX:1980431]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Fimoviridae; Emaravirus
RefSeq	NC_029558 Raspberry leaf blotch virus segment RNA2, complete genome. NC_029559 Raspberry leaf blotch virus segment RNA3, complete genome. NC_029560 Raspberry leaf blotch virus segment RNA4, complete genome. NC_029561 Raspberry leaf blotch virus segment RNA5, complete genome. NC_029567 Raspberry leaf blotch virus segment RNA1, complete genome. NC_029571 Raspberry leaf blotch virus isolate Pittenweem segment RNA6, complete sequence. NC_029572 Raspberry leaf blotch virus isolate Pittenweem segment RNA7, complete sequence. NC_029573 Raspberry leaf blotch virus isolate Pittenweem segment RNA8, complete sequence.
Evidence	Literature
Reference	PMID: 22049090
Authors	McGavin WJ, Mitchell C, Cock PJ, Wright KM, MacFarlane SA
Title	Raspberry leaf blotch virus, a putative new member of the genus Emaravirus, encodes a novel genomic RNA.
Journal	J Gen Virol. 2012 Feb;93(Pt 2):430-7.
DBLINKS	KEGG BRITE: NC_029558 NC_029559 NC_029560 NC_029561 NC_029567 NC_029571 NC_029572 NC_029573 ICTV: 202200015 ViralZone: genus, family

Scientific Name	Raspberry bushy dwarf virus [TAX:12451]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Mayoviridae; Idaeovirus; Idaeovirus rubi
RefSeq	NC_003739 Raspberry bushy dwarf virus RNA 1, complete sequence. NC_003740 Raspberry bushy dwarf virus RNA 2, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003739 NC_003740 KEGG GENOME: T40243 ViralZone: genus Descriptions of Plant Viruses: 360, 165

Scientific Name	Raspberry latent virus [TAX:907191]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; unclassified Reovirales
RefSeq	NC_014598 Raspberry latent virus segment S1, complete genome. NC_014599 Raspberry latent virus segment 2, complete sequence. NC_014600 Raspberry latent virus segment S3, complete genome. NC_014601 Raspberry latent virus segment S4, complete genome. NC_014602 Raspberry latent virus segment S5, complete genome. NC_014603 Raspberry latent virus segment S6, complete genome. NC_014604 Raspberry latent virus segment S7, complete genome. NC_014605 Raspberry latent virus segment S8, complete genome. NC_014606 Raspberry latent virus segment S9, complete genome. NC_014607 Raspberry latent virus segment S10, complete genome.
Evidence	Literature
Reference	PMID: 21144872
Authors	Quito-Avila DF, Jelkmann W, Tzanetakis IE, Keller K, Martin RR
Title	Complete sequence and genetic characterization of Raspberry latent virus, a novel member of the family Reoviridae.
Journal	Virus Res. 2011 Feb;155(2):397-405.
DBLINKS	KEGG BRITE: NC_014598 NC_014599 NC_014600 NC_014601 NC_014602 NC_014603 NC_014604 NC_014605 NC_014606 NC_014607

Scientific Name	Raspberry leaf mottle virus [TAX:326941]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Closterovirus
RefSeq	NC_008585 Raspberry mottle virus isolate HCRL Glen Clova, complete genome.
Evidence	Literature
Reference	PMID: 17448559
Authors	Tzanetakis IE, Halgren A, Mosier N, Martin RR
Title	Identification and characterization of Raspberry mottle virus, a novel member of the Closteroviridae.
Journal	Virus Res. 2007 Jul;127(1):26-33.
DBLINKS	KEGG BRITE: NC_008585 KEGG GENOME: T40244 ICTV: 202202999 ViralZone: family, genus

Scientific Name	Raspberry ringspot virus [TAX:12809]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus rubi
RefSeq	NC_005266 Raspberry ringspot virus RNA1, complete genome. NC_005267 Raspberry ringspot virus RNA 2, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_005266 NC_005267 KEGG GENOME: T40293 ViralZone: genus, family Descriptions of Plant Viruses: 6, 198

Scientific Name	Raspberry vein chlorosis virus [TAX:758677]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Cytorhabdovirus; Cytorhabdovirus rubus
RefSeq	NC_055529 Raspberry vein chlorosis virus isolate Hutton_1, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_055529 ViralZone: genus, family Descriptions of Plant Viruses: 174

Scientific Name	Rubus virus 1 [TAX:2754817]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Foveavirus; Foveavirus RuV1
RefSeq	NC_076865 Rubus virus 1 isolate E23, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076865 ViralZone: genus, family