Malus domestica

Malus domestica

Scientific Name	Malus domestica [TAX:3750]
Lineage	cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
DBLINKS	KEGG GENOME: T03194

Known viruses (24)

Scientific Name	Apple chlorotic fruit spot viroid [TAX:2029516]
Lineage	Viruses; Pospiviroidae; Apscaviroid; Apscaviroid maculamali
RefSeq	NC_076621 Apple chlorotic fruit spot viroid, complete genome.
Evidence	Literature
Reference	PMID: 31598842
Authors	Leichtfried T, Dobrovolny S, Reisenzein H, Steinkellner S, Gottsberger RA
Title	Apple chlorotic fruit spot viroid: a putative new pathogenic viroid on apple characterized by next-generation sequencing.
Journal	Arch Virol. 2019 Dec;164(12):3137-3140.
DBLINKS	KEGG BRITE: NC_076621 ICTV: 202313867 ViralZone: family

Scientific Name	Apple fruit crinkle viroid [TAX:190808]
Lineage	Viruses; Riboviria; unclassified viroids
RefSeq	NC_003777 JP 1999206382-A/1: Apple/Citrus junos fruit viroid gene.
Evidence	Literature
Reference	PMID: 18770018
Authors	Sano T, Isono S, Matsuki K, Kawaguchi-Ito Y, Tanaka K, Kondo K, Iijima A, Bar-Joseph M
Title	Vegetative propagation and its possible role as a genetic bottleneck in the shaping of the apple fruit crinkle viroid populations in apple and hop plants.
Journal	Virus Genes. 2008 Dec;37(3):298-303.
DBLINKS	KEGG BRITE: NC_003777

Scientific Name	Apple green crinkle associated virus [TAX:1211388]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Foveavirus; unclassified Foveavirus
RefSeq	NC_018714 Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_018714

Scientific Name	Apple hammerhead viroid-like circular RNA [TAX:1737346]
Lineage	Viruses; Avsunviroidae; Pelamoviroid; Pelamoviroid malleusmali
RefSeq	NC_028132 Apple hammerhead viroid-like circular RNA, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_028132 ICTV: 202307651 ViralZone: family

Scientific Name	Apple latent spherical virus [TAX:101688]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Cheravirus; Cheravirus mali
RefSeq	NC_003787 Apple latent spherical virus segment 1, complete sequence. NC_003788 Apple latent spherical virus segment 2, complete sequence.
Evidence	Literature
Reference	PMID: 10644854
Authors	Li C, Yoshikawa N, Takahashi T, Ito T, Yoshida K, Koganezawa H
Title	Nucleotide sequence and genome organization of apple latent spherical virus: a new virus classified into the family Comoviridae.
Journal	J Gen Virol. 2000 Feb;81(Pt 2):541-7.
DBLINKS	KEGG BRITE: NC_003787 NC_003788 ICTV: 202302135 ViralZone: family, genus

Scientific Name	Apple luteovirus 1 [TAX:2170544]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Regressovirinae; Luteovirus; Luteovirus mali
RefSeq	NC_040680 Apple luteovirus 1 isolate PA8, complete genome.
Evidence	Literature
Reference	PMID: 29764461
Authors	Liu H, Wu L, Nikolaeva E, Peter K, Liu Z, Mollov D, Cao M, Li R
Title	Characterization of a new apple luteovirus identified by high-throughput sequencing.
Journal	Virol J. 2018 May 15;15(1):85.
DBLINKS	KEGG BRITE: NC_040680 ICTV: 202307551

Scientific Name	Apple necrotic mosaic virus [TAX:1779339]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Bromoviridae; Ilarvirus; unclassified Ilarvirus
RefSeq	NC_040469 Apple necrotic mosaic virus genomic RNA, segment RNA1, complete sequence. NC_040470 Apple necrotic mosaic virus genomic RNA, segment RNA3, complete sequence. NC_040471 Apple necrotic mosaic virus genomic RNA, segment RNA2, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	Apple necrotic mosaic virus, a novel ilarvirus from mosaic-diseased apple trees in Japan and China H Noda, N Yamagishi, H Yaegashi, F Xing… - Journal of General Plant …, 2017 - Springer
Evidence	Other
Comment	Apple necrotic mosaic virus, a novel ilarvirus from mosaic-diseased apple trees in Japan and China H Noda, N Yamagishi, H Yaegashi, F Xingâ¦ - Journal of General Plant â¦, 2017 - Springer
DBLINKS	KEGG BRITE: NC_040469 NC_040470 NC_040471

Scientific Name	Apple ourmia-like virus 2 [TAX:2709319]
Lineage	Viruses; Riboviria; Orthornavirae; Lenarviricota; Miaviricetes; Ourlivirales; Botourmiaviridae; Penoulivirus; Penoulivirus malus
RefSeq	NC_076731 MAG: Apple ourmia-like virus 2 isolate WA1 RNA-dependent RNA polymerase (QKR06_gp1) gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076731 ICTV: 202313232

Scientific Name	Apple ourmia-like virus 3 [TAX:2709320]
Lineage	Viruses; Riboviria; Orthornavirae; Lenarviricota; Miaviricetes; Ourlivirales; Botourmiaviridae; Magoulivirus; Magoulivirus malus
RefSeq	NC_076732 MAG: Apple ourmia-like virus 3 isolate WA1 RNA-dependent RNA polymerase (QKR07_gp1) gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076732 ICTV: 202312601

Scientific Name	Apple rootstock virus A [TAX:2563012]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Betanucleorhabdovirus; Betanucleorhabdovirus mali
RefSeq	NC_076267 Apple rootstock virus A, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076267 ICTV: 202309367 ViralZone: genus, family

Scientific Name	Apple rubbery wood virus 1 [TAX:2164102]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae; Rubodvirus; Rubodvirus mali
RefSeq	NC_055390 Apple rubbery wood virus 1 isolate 982-11 segment L RNA-dependent RNA polymerase (RdRp) gene, complete cds. NC_055391 Apple rubbery wood virus 1 isolate 982-11 segment M movement protein (MP) gene, complete cds. NC_055392 Apple rubbery wood virus 1 isolate 982-11 segment S capsid protein (CP) gene, complete cds.
Evidence	Literature
Reference	PMID: 30673558
Authors	Rott ME, Kesanakurti P, Berwarth C, Rast H, Boyes I, Phelan J, Jelkmann W
Title	Discovery of Negative-Sense RNA Viruses in Trees Infected with Apple Rubbery Wood Disease by Next-Generation Sequencing.
Journal	Plant Dis. 2018 Jul;102(7):1254-1263.
DBLINKS	KEGG BRITE: NC_055390 NC_055391 NC_055392 ICTV: 202307648 ViralZone: family

Scientific Name	Apple rubbery wood virus 2 [TAX:2164103]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae; Rubodvirus; Rubodvirus prosserense
RefSeq	NC_055533 Apple rubbery wood virus 2 isolate R12 segment Sb capsid protein (CP) gene, complete cds. NC_055534 Apple rubbery wood virus 2 isolate R12 segment L RNA-dependent RNA polymerase (RdRp) gene, complete cds. NC_055535 Apple rubbery wood virus 2 isolate R12 segment Sa capsid protein (CP) gene, complete cds. NC_055536 Apple rubbery wood virus 2 isolate R12 segment Ma movement protein (MP) gene, complete cds. NC_055537 Apple rubbery wood virus 2 isolate R12 segment Mb movement protein (MP) gene, complete cds.
Evidence	Literature
Reference	PMID: 30673558
Authors	Rott ME, Kesanakurti P, Berwarth C, Rast H, Boyes I, Phelan J, Jelkmann W
Title	Discovery of Negative-Sense RNA Viruses in Trees Infected with Apple Rubbery Wood Disease by Next-Generation Sequencing.
Journal	Plant Dis. 2018 Jul;102(7):1254-1263.
DBLINKS	KEGG BRITE: NC_055533 NC_055534 NC_055535 NC_055536 NC_055537 ICTV: 202307649 ViralZone: family

Scientific Name	Apple scar skin viroid-C [TAX:325110]
Lineage	Viruses; Pospiviroidae; Apscaviroid; Apscaviroid cicatricimali
GenBank	AY972082 Apple scar skin viroid-C isolate Liaoning, complete genome.
Evidence	GenBank
Evidence	Literature
Reference	Apricot is a new host ofApple scar skin viroid Y Zhao, J Niu - Australasian Plant Disease Notes, 2008 - Springer
DBLINKS	ViralZone: family

Scientific Name	Apple virus B [TAX:2709746]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Mymonaviridae; Rhizomonavirus; Rhizomonavirus mali
RefSeq	NC_076445 MAG: Apple virus B isolate WA1 hypothetical protein (QKO18_gp1), hypothetical protein (QKO18_gp2), hypothetical protein (QKO18_gp3), hypothetical protein (QKO18_gp4), and polyprotein (QKO18_gp5) genes, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076445 ICTV: 202308905 ViralZone: family, genus

Scientific Name	Apscaviroid cicatricimali [TAX:12895]
Lineage	Viruses; Pospiviroidae; Apscaviroid
RefSeq	NC_001340 Apple scar skin viroid, complete genome.
Evidence	Literature
Reference	PMID: 25962536
Authors	Khan S, Mackay J, Liefting L, Ward L
Title	Development of a duplex one-step RT-qPCR assay for the simultaneous detection of Apple scar skin viroid and plant RNA internal control.
Journal	J Virol Methods. 2015 Sep 1;221:100-5.
DBLINKS	KEGG BRITE: NC_001340 ICTV: 202304500 ViralZone: family

Scientific Name	Apscaviroid fossulamali [TAX:73494]
Lineage	Viruses; Pospiviroidae; Apscaviroid
RefSeq	NC_003463 Apple dimple fruit viroid, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_003463 ICTV: 202304499 ViralZone: family

Scientific Name	Carnation mottle virus [TAX:11986]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae; Alphacarmovirus; Alphacarmovirus dianthi
RefSeq	NC_001265 Carnation mottle virus (CarMV) complete genomic RNA sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001265 KEGG GENOME: T40246 ICTV: 202305197 Descriptions of Plant Viruses: 420, 7

Scientific Name	Dapple apple viroid [TAX:28266]
Lineage	Viruses; Pospiviroidae; Apscaviroid; Apscaviroid cicatricimali
GenBank	X71599 Dapple Apple Viroid complete nucleotide sequence.
Evidence	Literature
Reference	PMID: 1796215
Authors	Hadidi A, Hansen AJ, Parish CL, Yang X
Title	Scar skin and dapple apple viroids are seed-borne and persistent in infected apple trees.
Journal	Res Virol. 1991 Jul-Aug;142(4):289-96.
DBLINKS	ViralZone: family

Scientific Name	Ilarvirus ApMV [TAX:12319]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Bromoviridae; Ilarvirus
RefSeq	NC_003464 Apple mosaic virus RNA 1 putative methyltransferase/helicase gene, complete cds. NC_003465 Apple mosaic virus RNA 2 putative polymerase gene, complete cds. NC_003480 Apple mosaic virus RNA 3, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 10640567
Authors	Shiel PJ, Berger PH
Title	The complete nucleotide sequence of apple mosaic virus (ApMV) RNA 1 and RNA 2: ApMV is more closely related to alfalfa mosaic virus than to other ilarviruses.
Journal	J Gen Virol. 2000 Jan;81(Pt 1):273-8.
DBLINKS	KEGG BRITE: NC_003464 NC_003465 NC_003480 KEGG GENOME: T40210 ICTV: 202302778

Scientific Name	Luteovirus sociomali [TAX:2054409]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Regressovirinae; Luteovirus
RefSeq	NC_040549 Apple-associated luteovirus isolate A68, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 29134338
Authors	Shen P, Tian X, Zhang S, Ren F, Li P, Yu YQ, Li R, Zhou C, Cao M
Title	Molecular characterization of a novel luteovirus infecting apple by next-generation sequencing.
Journal	Arch Virol. 2018 Mar;163(3):761-765.
DBLINKS	KEGG BRITE: NC_040549 ICTV: 202307550

Scientific Name	Maldovirus mali [TAX:2843704]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Maldovirus
RefSeq	NC_026760 Apple geminivirus 1 isolate China, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_026760 ICTV: 202309169 ViralZone: family

Scientific Name	Malus domestica virus A [TAX:2664236]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Velarivirus
RefSeq	NC_055599 Malus domestica virus A isolate J1, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_055599 ICTV: 202308912

Scientific Name	Temperate fruit decay-associated virus [TAX:1628899]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Mulpavirales; Amesuviridae; Temfrudevirus; Temfrudevirus temperatum
RefSeq	NC_027632 Temperate fruit decay-associated virus isolate MFB10, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_027632 ICTV: 202315106

Scientific Name	Tobacco ringspot virus [TAX:12282]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus nicotianae
RefSeq	NC_005096 Tobacco ringspot virus RNA 2, complete sequence. NC_005097 Tobacco ringspot virus RNA 1, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_005096 NC_005097 KEGG GENOME: T40148 ICTV: 202302130 ViralZone: family, genus Descriptions of Plant Viruses: 309, 17