Oncorhynchus tshawytscha

Oncorhynchus tshawytscha

Scientific Name	Oncorhynchus tshawytscha [TAX:74940]
Lineage	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Osteoglossocephalai; Clupeocephala; Euteleosteomorpha; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
DBLINKS	KEGG GENOME: T05605

Known viruses (13)

Scientific Name	Andrias davidianus ranavirus [TAX:1398177]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; Pimascovirales; Iridoviridae; Alphairidovirinae; Ranavirus; Common midwife toad virus
GenBank	KC865735 Andrias davidianus ranavirus isolate 1201, complete genome.
Evidence	Literature
Reference	PMID: 24143877
Authors	Chen Z, Gui J, Gao X, Pei C, Hong Y, Zhang Q
Title	Genome architecture changes and major gene variations of Andrias davidianus ranavirus (ADRV).
Journal	Vet Res. 2013 Oct 21;44:101.
Comment	Culture cell line: EPC cells, CHSE cells, BF-2 cells, GCF cells, GCO cells, FHM cells
DBLINKS	ICTV: 202305861

Scientific Name	Chum salmon reovirus CS [TAX:173082]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Spinareoviridae; Aquareovirus; Aquareovirus salmonis
RefSeq	NC_007582 Chum salmon reovirus CS segment 1, complete sequence. NC_007583 Chum salmon reovirus CS segment 2, complete sequence. NC_007584 Chum salmon reovirus CS segment 3, complete sequence. NC_007585 Chum salmon reovirus CS segment 4, complete genome. NC_007586 Chum salmon reovirus CS segment 5, complete genome. NC_007587 Chum salmon reovirus CS segment 7, complete genome. NC_007588 Chum salmon reovirus CS segment 8, complete genome. NC_007589 Chum salmon reovirus CS segment 9, complete genome. NC_007590 Chum salmon reovirus CS segment 10, complete genome. NC_007591 Chum salmon reovirus CS segment 11, complete genome. NC_007592 Chum salmon reovirus CS segment 6, complete genome.
Evidence	Literature
Reference	PMID: 3819694
Authors	Winton JR, Lannan CN, Fryer JL, Hedrick RP, Meyers TR, Plumb JA, Yamamoto T
Title	Morphological and biochemical properties of four members of a novel group of reoviruses isolated from aquatic animals.
Journal	J Gen Virol. 1987 Feb;68 ( Pt 2):353-64.
Comment	Culture cell line: CHSE-21 CHH-1 Culture cell line: CHSE-21 CHH-1 Culture cell line: CHSE-21 CHH-1
DBLINKS	KEGG BRITE: NC_007582 NC_007583 NC_007584 NC_007585 NC_007586 NC_007587 NC_007588 NC_007589 NC_007590 NC_007591 NC_007592 ICTV: 202304920 ViralZone: family, genus

Scientific Name	Etheostoma fonticola aquareovirus [TAX:1862978]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Spinareoviridae; Aquareovirus; unclassified Aquareovirus
RefSeq	NC_030405 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 1, complete sequence. NC_030406 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 6, complete sequence. NC_030407 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 7, complete sequence. NC_030408 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 8, complete sequence. NC_030409 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 9, complete sequence. NC_030410 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 10, complete sequence. NC_030411 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 11, complete sequence. NC_030412 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 2, complete sequence. NC_030413 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 3, complete sequence. NC_030414 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 4, complete sequence. NC_030415 Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment 5, complete sequence.
Evidence	Literature
Reference	PMID: 30198485
Authors	Iwanowicz LR, Iwanowicz DD, Adams CR, Lewis TD, Brandt TM, Sanders LR, Cornman RS
Title	Isolation, characterization and molecular identification of a novel aquareovirus that infects endangered fountain darter Etheostoma fonticola.
Journal	Dis Aquat Organ. 2018 Sep 10;130(2):95-108.
Comment	Culture cell line:CHSE-214, rainbow trout gonad-2, fathead minnow cells
DBLINKS	KEGG BRITE: NC_030405 NC_030406 NC_030407 NC_030408 NC_030409 NC_030410 NC_030411 NC_030412 NC_030413 NC_030414 NC_030415 ViralZone: family, genus

Scientific Name	Fall chinook aquareovirus [TAX:1963254]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Spinareoviridae; Aquareovirus; unclassified Aquareovirus
RefSeq	NC_034162 Fall chinook aquareovirus isolate GSH1 segment 7, complete sequence. NC_034163 Fall chinook aquareovirus isolate GSH1 segment 8, complete sequence. NC_034164 Fall chinook aquareovirus isolate GSH1 segment 9, complete sequence. NC_034165 Fall chinook aquareovirus isolate GSH1 segment 10, complete sequence. NC_034166 Fall chinook aquareovirus isolate GSH1 segment 11, complete sequence. NC_034168 Fall chinook aquareovirus isolate GSH1 segment 1, complete sequence. NC_034169 Fall chinook aquareovirus isolate GSH1 segment 2, complete sequence. NC_034170 Fall chinook aquareovirus isolate GSH1 segment 3, complete sequence. NC_034171 Fall chinook aquareovirus isolate GSH1 segment 4, complete sequence. NC_034172 Fall chinook aquareovirus isolate GSH1 segment 5, complete sequence. NC_034173 Fall chinook aquareovirus isolate GSH1 segment 6, complete sequence.
Evidence	Literature
Reference	Complete genome of Atlantic halibut reovirus (AHRV) associated with mortality in production of Atlantic halibut (Hippoglossus hippoglossus) fry Complete genome of Atlantic halibut reovirus (AHRV) associated with mortality in production of Atlantic halibut (Hippoglossus hippoglossus) fry
Comment	Culture cell line: CHSE-214 cells
DBLINKS	KEGG BRITE: NC_034162 NC_034163 NC_034164 NC_034165 NC_034166 NC_034168 NC_034169 NC_034170 NC_034171 NC_034172 NC_034173 ViralZone: family, genus

Scientific Name	Infectious hematopoietic necrosis virus [TAX:11290]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Gammarhabdovirinae; Novirhabdovirus; Novirhabdovirus salmonid
RefSeq	NC_001652 Infectious hematopoietic necrosis virus, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 8578857
Authors	Morzunov SP, Winton JR, Nichol ST
Title	The complete genome structure and phylogenetic relationship of infectious hematopoietic necrosis virus.
Journal	Virus Res. 1995 Oct;38(2-3):175-92.
Comment	Culture cell line:CHSE-214
DBLINKS	KEGG BRITE: NC_001652 ICTV: 202301739 ViralZone: family

Scientific Name	Isavirus salaris [TAX:55987]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Insthoviricetes; Articulavirales; Orthomyxoviridae; Isavirus
RefSeq	NC_006498 Infectious salmon anemia virus segment 7, complete sequence. NC_006499 Infectious salmon anemia virus segment 6, complete sequence. NC_006500 Infectious salmon anemia virus segment 5 putative acetylesterase (P3) gene, complete cds. NC_006501 Infectious salmon anemia virus segment 4, complete sequence. NC_006502 Infectious salmon anemia virus segment 3, complete sequence. NC_006503 Infectious salmon anemia virus segment 2, complete sequence.
Evidence	Literature
Reference	PMID: 11807235
Authors	Clouthier SC, Rector T, Brown NEC, Anderson ED
Title	Genomic organization of infectious salmon anaemia virus.
Journal	J Gen Virol. 2002 Feb;83(Pt 2):421-428.
Comment	Culture cell line: CHSE-214
DBLINKS	KEGG BRITE: NC_006498 NC_006499 NC_006500 NC_006501 NC_006502 NC_006503 ICTV: 202303964 ViralZone: genus

Scientific Name	Pacific salmon nidovirus [TAX:2587487]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Pitovirinae; Alphapironavirus; Samovirus; Alphapironavirus salmonis
RefSeq	NC_076697 MAG: Pacific salmon nidovirus isolate H14 ORF1a polyprotein (QKQ71_gp1), ORF1b polyprotein (QKQ71_gp2), LAP1C-like protein (QKQ71_gp3), spike protein (QKQ71_gp4), envelope (QKQ71_gp5), membrane protein (QKQ71_gp6), and nucleoprotein (QKQ71_gp7) genes, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076697 ICTV: 202313907 ViralZone: family

Scientific Name	Rainbow trout orthomyxovirus-1 [TAX:1954184]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Insthoviricetes; Articulavirales; Orthomyxoviridae; Mykissvirus; Mykissvirus tructae
RefSeq	NC_078521 Rainbow trout orthomyxovirus-1 strain Rainbow/Idaho/347/1997 putative nucleoprotein (NP) gene, complete cds. NC_078522 Rainbow trout orthomyxovirus-1 strain Rainbow/Idaho/347/1997 putative polymerase basic 1 (PB1) gene, complete cds. NC_078523 Rainbow trout orthomyxovirus-1 strain Rainbow/Idaho/347/1997 putative hemagglutinin (HA) gene, complete cds. NC_078524 Rainbow trout orthomyxovirus-1 strain Rainbow/Idaho/347/1997 putative matrix protein 1 (M1-M2) and putative matrix protein 2 (M1-M2) genes, complete cds. NC_078525 Rainbow trout orthomyxovirus-1 strain Rainbow/Idaho/347/1997 putative nonstructural protein 1 (NS1-NEP) and putative nuclear export protein (NS1-NEP) genes, complete cds. NC_078526 Rainbow trout orthomyxovirus-1 strain Rainbow/Idaho/347/1997 putative neuraminidase (NA) gene, complete cds. NC_078527 Rainbow trout orthomyxovirus-1 strain Rainbow/Idaho/347/1997 putative polymerase acidic (PA) gene, complete cds. NC_078528 Rainbow trout orthomyxovirus-1 strain Rainbow/Idaho/347/1997 putative polymerase basic 2 (PB2) gene, complete cds.
Evidence	Literature
Reference	PMID: 28088362
Authors	Batts WN, LaPatra SE, Katona R, Leis E, Ng TFF, Brieuc MSO, Breyta RB, Purcell MK, Conway CM, Waltzek TB, Delwart E, Winton JR
Title	Molecular characterization of a novel orthomyxovirus from rainbow and steelhead trout (Oncorhynchus mykiss).
Journal	Virus Res. 2017 Feb 15;230:38-49.
Comment	Culture cell line: CHSE-214
DBLINKS	KEGG BRITE: NC_078521 NC_078522 NC_078523 NC_078524 NC_078525 NC_078526 NC_078527 NC_078528 ICTV: 202312228

Scientific Name	Salmon aquaparamyxovirus [TAX:381543]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Feraresvirinae; Aquaparamyxovirus; Aquaparamyxovirus salmonis
RefSeq	NC_025360 Atlantic salmon paramyxovirus isolate ASPV/Yrkje371/95, complete genome. NC_076269 Salmon aquaparamyxovirus strain A, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_025360 NC_076269 ICTV: 202307559, 202301589 ViralZone: genus, family

Scientific Name	Salmon pancreas disease virus [TAX:84589]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Togaviridae; Alphavirus
RefSeq	NC_003930 Salmon pancreas disease virus, complete genome.
Evidence	Literature
Reference	PMID: 12021349
Authors	Weston J, Villoing S, Brémont M, Castric J, Pfeffer M, Jewhurst V, McLoughlin M, Rødseth O, Christie KE, Koumans J, Todd D
Title	Comparison of two aquatic alphaviruses, salmon pancreas disease virus and sleeping disease virus, by using genome sequence analysis, monoclonal reactivity, and cross-infection.
Journal	J Virol. 2002 Jun;76(12):6155-63.
Comment	Culture cell line: CHSE-214
DBLINKS	KEGG BRITE: NC_003930

Scientific Name	Salmon pescarenavirus 1 [TAX:2587489]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Arenaviridae; Antennavirus; Antennavirus salmonis
RefSeq	NC_078283 MAG: Salmon pescarenavirus 1 isolate G518 segment L RNA-dependent RNA polymerase (QK659_sLgp1) gene, complete cds. NC_078284 MAG: Salmon pescarenavirus 1 isolate G518 segment M glycoprotein (QK659_sMgp1) gene, complete cds. NC_078285 MAG: Salmon pescarenavirus 1 isolate G518 segment S nucleoprotein (QK659_sSgp1) gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_078283 NC_078284 NC_078285 ICTV: 202309577 ViralZone: genus, family

Scientific Name	Salmonid herpesvirus 2 [TAX:31771]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Alloherpesviridae; Salmovirus; Salmovirus salmonidallo2
RefSeq	NC_075802 Salmonid herpesvirus 2 isolate NeVTA DNA polymerase gene, partial cds.
Evidence	Literature
Reference	PMID: 9565695
Authors	Belogortseva N, Molchanova V, Glazunov V, Evtushenko E, Luk'yanov P
Title	N-Acetyl-D-glucosamine-specific lectin from the ascidian Didemnum ternatanum.
Journal	Biochim Biophys Acta. 1998 Apr 10;1380(2):249-56.
Comment	Culture cell line: CHSE, RTG
DBLINKS	KEGG BRITE: NC_075802 ICTV: 202301409 ViralZone: family, genus

Scientific Name	Scophthalmus maximus reovirus [TAX:994485]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Spinareoviridae; Aquareovirus; Aquareovirus scophthalmi
RefSeq	NC_038634 Scophthalmus maximus reovirus segment L2, complete sequence. NC_038635 Scophthalmus maximus reovirus segment L3, complete sequence. NC_038636 Scophthalmus maximus reovirus segment M5, complete sequence. NC_038637 Scophthalmus maximus reovirus segment M6, complete sequence. NC_038638 Scophthalmus maximus reovirus segment S9, complete sequence. NC_038639 Scophthalmus maximus reovirus segment S8, complete sequence. NC_038640 Scophthalmus maximus reovirus segment L1, complete sequence. NC_038641 Scophthalmus maximus reovirus segment M4, complete sequence. NC_038642 Scophthalmus maximus reovirus segment S10, complete sequence. NC_038643 Scophthalmus maximus reovirus segment S7, complete sequence. NC_038644 Scophthalmus maximus reovirus segment S11, complete sequence.
Evidence	Literature
Reference	PMID: 21689389
Authors	Ke F, He LB, Pei C, Zhang QY
Title	Turbot reovirus (SMReV) genome encoding a FAST protein with a non-AUG start site.
Journal	BMC Genomics. 2011 Jun 20;12:323.
Comment	Culture cell line：CHSE, FE Culture cell line：CHSE, FE
DBLINKS	KEGG BRITE: NC_038634 NC_038635 NC_038636 NC_038637 NC_038638 NC_038639 NC_038640 NC_038641 NC_038642 NC_038643 NC_038644 ICTV: 202304924 ViralZone: family, genus