KEGG Modules

Energy metabolism

 Carbon fixation

 Nitrogen metabolism
M00175 Nitrogen fixation, nitrogen => ammonia [PATH: awo00910]


 Methane metabolism

 Sulfur metabolism
Carbohydrate and lipid metabolism

 Central carbohydrate metabolism
M00002 Glycolysis, core module involving three-carbon compounds [PATH: awo00010]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: awo00010 awo00020 awo00620]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: awo00020]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: awo00030 awo00230]


 Other carbohydrate metabolism

 Fatty acid metabolism
M00083 Fatty acid biosynthesis, elongation [PATH: awo00061]


 Lipid metabolism

 Lipopolysaccharide metabolism

 Sugar metabolism
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH: awo00520]


 Glycan metabolism

 Glycosaminoglycan metabolism

 Terpenoid backbone biosynthesis

 Sterol biosynthesis

 Other terpenoid biosynthesis
Nucleotide and amino acid metabolism

 Purine metabolism
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH: awo00230]
M00050 Guanine ribonucleotide biosynthesis IMP => GDP,GTP [PATH: awo00230]


 Pyrimidine metabolism
M00051 Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP [PATH: awo00240]
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH: awo00240]


 Serine and threonine metabolism
M00018 Threonine biosynthesis, apartate => homoserine => threonine [PATH: awo00260]


 Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH: awo00270]


 Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH: awo00290]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH: awo00290]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH: awo00290]


 Lysine metabolism

 Arginine and proline metabolism
M00015 Proline biosynthesis, glutamate => proline [PATH: awo00330]
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH: awo00330]


 Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH: awo00340]


 Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: awo00400]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: awo00400]
M00024 Phenylalanine biosynthesis, chorismate => phenylalanine [PATH: awo00400]
M00025 Tyrosine biosynthesis, chorismate => tyrosine [PATH: awo00400]


 Other amino acid metabolism

 Cofactor and vitamin biosynthesis
M00115 NAD biosynthesis, aspartate => NAD [PATH: awo00760]
M00140 C1-unit interconversion, prokaryotes [PATH: awo00670]


 Polyamine biosynthesis

 Phenylpropanoid and flavonoid biosynthesis

 Alkaloid and other secondary metabolite biosynthesis
Secondary metabolism

 Aromatics degradataion

Energy metabolism

 Photosynthesis

 ATP synthesis
M00157 F-type ATPase, bacteria [PATH: awo00190]
M00159 V-type ATPase, prokaryotes [PATH: awo00190]

Carbohydrate and lipid metabolism

 Carbohydrate metabolism
M00313 indolepyruvate:ferredoxin oxidoreductase


 Glycan metabolism
Genetic information processing

 DNA polymerase
M00260 DNA polymerase III complex, bacteria [BR:ko03032 ko03400][PATH: awo03030 awo03430 awo03440]


 Replication system

 Repair system

 RNA polymerase

 Spliceosome

 RNA processing

 Ribosome

 Proteasome

 Ubiquitin system

 Protein processing
Environmental information processing

 Mineral and organic ion transport system
M00189 Molybdate transport system [BR:ko02000][PATH: awo02010]
M00435 Taurine transport system [BR:ko02000][PATH: awo02010]
M00299 Spermidine/putrescine transport system [BR:ko02000][PATH: awo02010]
M00209 Osmoprotectant transport system [BR:ko02000][PATH: awo02010]


 Saccharide and polyol transport system
M00211 Putative ABC transport system [BR:ko02000]


 Phosphate and amino acid transport system
M00222 Phosphate transport system [BR:ko02000][PATH: awo02010]
M00237 Branched-chain amino acid transport system [BR:ko02000][PATH: awo02010]
M00238 D-Methionine transport system [BR:ko02000][PATH: awo02010]
M00228 Putative glutamine transport system [BR:ko02000][PATH: awo02010]
M00236 Putative polar amino acid transport system [BR:ko02000]


 Peptide and nickel transport system
M00440 Nickel transport system [BR:ko02000][PATH: awo02010]
M00239 Peptides/nickel transport system [BR:ko02000][PATH: awo02010]


 Metallic cation, iron-siderophore and vitamin B12 transport system
M00240 Iron complex transport system [BR:ko02000][PATH: awo02010]
M00242 Zinc transport system [BR:ko02000][PATH: awo02010]
M00245 Cobalt transport system [BR:ko02000][PATH: awo02010]
M00582 Energy-coupling factor transport system [BR:ko02000][PATH: awo02010]
M00247 Putative ABC transport system [BR:ko02000]


 ABC-2 type and other transport systems
M00256 Cell division transport system [BR:ko02000][PATH: awo02010]
M00248 Putative antibiotic transport system [BR:ko02000][PATH: awo02010]
M00258 Putative ABC transport system [BR:ko02000]


 Phosphotransferase system (PTS)
M00282 PTS system, D-glucosamine-specific II component [BR:ko02000][PATH: awo00520 awo02060]
M00273 PTS system, fructose-specific II component [BR:ko02000][PATH: awo00051 awo02060]
M00280 PTS system, glucitol/sorbitol-specific II component [BR:ko02000][PATH: awo00051 awo02060]


 Bacterial secretion system

Metabolism

 Aminoacyl tRNA
M00360 Aminoacyl-tRNA biosynthesis, prokaryotes [PATH: awo00970]


 Nucleotide sugar
Environmental information processing

 Two-component regulatory system
M00434 PhoR-PhoB (phosphate starvation response) two-component regulatory system [BR:ko02022][PATH: awo02020]
M00454 KdpD-KdpE (potassium transport) two-component regulatory system [BR:ko02022][PATH: awo02020]

Genotypic signature

 Metabolic capacity

 Pathogenicity