KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:pma00010 pma01200 pma01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:pma00010 pma01200 pma01230 pma01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pma00010 pma00020 pma01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pma00010 pma00020 pma00620 pma00785 pma01200 pma01210 pma01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:pma00020 pma01200 pma01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pma00020 pma01200 pma01210 pma01230 pma01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pma00020 pma01200 pma01210 pma01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pma00030 pma01200 pma01100 pma01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pma00030 pma01200 pma01100 pma01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pma00030 pma01200 pma01230 pma01100 pma01120]
M00580 Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:pma00030 pma01200 pma01230 pma01100 pma01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:pma00030 pma00230 pma01200 pma01230 pma01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:pma00030 pma01200 pma01100 pma01120]

Other carbohydrate metabolism
M00014 Glucuronate pathway (uronate pathway) [PATH:pma00040 pma01100]
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:pma00040 pma00030 pma01100]
M00061 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:pma00040 pma00030 pma01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:pma00052 pma01100]
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:pma00052 pma01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:pma00500 pma01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH:pma00500 pma01100]
M00565 Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:pma00500 pma01100 pma01110]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:pma00520 pma01250 pma01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:pma00520 pma00052 pma01250 pma01100]
M00892 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH:pma00520 pma01250 pma01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:pma00520 pma01250 pma01100]
M00761 Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:pma00520 pma01100]
M00012 Glyoxylate cycle [PATH:pma00630 pma01200 pma01100 pma01110]
M00373 Ethylmalonyl pathway [PATH:pma00630 pma01200 pma01100 pma01120]
M00013 Malonate semialdehyde pathway, propanoyl-CoA => acetyl-CoA [PATH:pma00410 pma00640 pma01200 pma01100]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pma00280 pma00630 pma00640 pma01200 pma01100]
M00130 Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH:pma00562 pma01100]
M00131 Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol [PATH:pma00562 pma01100]
M00132 Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH:pma00562 pma01100]

Energy metabolism
Carbon fixation
M00165 Reductive pentose phosphate cycle (Calvin cycle) [PATH:pma00710 pma01200 pma01100 pma01120]
M00168 CAM (Crassulacean acid metabolism), dark [PATH:pma00620 pma00710 pma01200 pma01100 pma01120]
M00169 CAM (Crassulacean acid metabolism), light [PATH:pma00620 pma00710 pma01200 pma01100 pma01120]
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:pma00430 pma00620 pma01200 pma01100 pma01120]

Methane metabolism
M00345 Formaldehyde assimilation, ribulose monophosphate pathway [PATH:pma00030 pma00680 pma01200 pma01230 pma01100 pma01120]

Nitrogen metabolism
M00175 Nitrogen fixation, nitrogen => ammonia [PATH:pma00910 pma01100 pma01120]
M00531 Assimilatory nitrate reduction, nitrate => ammonia [PATH:pma00910 pma01100 pma01120]
M00530 Dissimilatory nitrate reduction, nitrate => ammonia [PATH:pma00910 pma01100 pma01120]
M00529 Denitrification, nitrate => nitrogen [PATH:pma00910 pma01100 pma01120]

Sulfur metabolism
M00176 Assimilatory sulfate reduction, sulfate => H2S [PATH:pma00920 pma01100 pma01120]

Photosynthesis
M00161 Photosystem II [PATH:pma00195 pma01100]
M00163 Photosystem I [PATH:pma00195 pma01100]

ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH:pma00190 pma01100]
M00145 NAD(P)H:quinone oxidoreductase, chloroplasts and cyanobacteria [PATH:pma00190 pma01100]
M00142 NADH:ubiquinone oxidoreductase, mitochondria [PATH:pma00190 pma01100]
M00143 NADH dehydrogenase (ubiquinone) Fe-S protein/flavoprotein complex, mitochondria [PATH:pma00190 pma01100]
M00149 Succinate dehydrogenase, prokaryotes [PATH:pma00190 pma01100]
M00150 Fumarate reductase, prokaryotes [PATH:pma00190 pma01100]
M00148 Succinate dehydrogenase (ubiquinone) [PATH:pma00190 pma01100]
M00151 Cytochrome bc1 complex respiratory unit [PATH:pma00190 pma01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH:pma00190 pma01100]
M00153 Cytochrome bd ubiquinol oxidase [PATH:pma00190]
M00417 Cytochrome o ubiquinol oxidase [PATH:pma00190 pma01100]
M00416 Cytochrome aa3-600 menaquinol oxidase [PATH:pma00190 pma01100]
M00156 Cytochrome c oxidase, cbb3-type [PATH:pma00190 pma01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:pma00190 pma00195 pma01100]
M00158 F-type ATPase, eukaryotes [PATH:pma00190 pma01100]
M00160 V-type ATPase, eukaryotes [PATH:pma00190 pma01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:pma00061 pma01212 pma01100]
M00083 Fatty acid biosynthesis, elongation [PATH:pma00061 pma01212 pma01100]
M00085 Fatty acid elongation in mitochondria [PATH:pma01212 pma01100]
M00415 Fatty acid elongation in endoplasmic reticulum [PATH:pma01212 pma01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:pma00061 pma00071 pma01212 pma01100]
M00087 beta-Oxidation [PATH:pma00071 pma01212 pma01100]
M00861 beta-Oxidation, peroxisome, VLCFA [PATH:pma01212 pma01100]

Sterol biosynthesis
M00103 Cholecalciferol biosynthesis [PATH:pma01100]
M00862 beta-Oxidation, peroxisome, tri/dihydroxycholestanoyl-CoA => choloyl/chenodeoxycholoyl-CoA [PATH:pma01100]
M00107 Steroid hormone biosynthesis, cholesterol => pregnenolone => progesterone [PATH:pma01100]
M00110 C19/C18-Steroid hormone biosynthesis, pregnenolone => androstenedione => estrone [PATH:pma01100]
M00976 C19-Steroid hormone biosynthesis, pregnenolone => testosterone => dihydrotestosterone [PATH:pma01100]
M00977 C19-Steroid hormone biosynthesis (androgen backdoor pathway), pregnenolone => androsterone => dihydrotestosterone [PATH:pma01100]

Lipid metabolism
M00089 Triacylglycerol biosynthesis [PATH:pma00561 pma01100]
M00098 Acylglycerol degradation [PATH:pma00561 pma01100]
M00090 Phosphatidylcholine (PC) biosynthesis, choline => PC [PATH:pma00564 pma01100]
M00091 Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:pma00564 pma01100]
M00092 Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE [PATH:pma00564 pma01100]
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:pma00564 pma01100]
M00094 Ceramide biosynthesis [PATH:pma01100]
M00066 Lactosylceramide biosynthesis [PATH:pma01100]
M00067 Sulfoglycolipids biosynthesis, ceramide/1-alkyl-2-acylglycerol => sulfatide/seminolipid [PATH:pma01100]
M00099 Sphingosine biosynthesis [PATH:pma01100]
M00100 Sphingosine degradation [PATH:pma01100]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pma00230 pma01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pma00230 pma01232 pma01240 pma01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pma00230 pma01232 pma01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pma00230 pma00240 pma01232 pma01100]
M00958 Adenine ribonucleotide degradation, AMP => Urate [PATH:pma00230 pma01232 pma01100]
M00959 Guanine ribonucleotide degradation, GMP => Urate [PATH:pma00230 pma01232 pma01100]
M00546 Purine degradation, xanthine => urea [PATH:pma00230 pma01100]

Pyrimidine metabolism
M00051 De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:pma00240 pma01240 pma01100]
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pma00240 pma01232 pma01240 pma01100]
M00938 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pma00240 pma01232 pma01100]
M00046 Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:pma00240 pma00410 pma00770 pma01100]

Amino acid metabolism
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH:pma00260 pma00680 pma01200 pma01230 pma01100]
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:pma00260 pma01230 pma01100 pma01110]
M00621 Glycine cleavage system [PATH:pma00260 pma00630 pma00785 pma01200 pma01100]
M00555 Betaine biosynthesis, choline => betaine [PATH:pma00260 pma01100]
M00974 Betaine metabolism, animals, betaine => glycine [PATH:pma00260 pma01100]
M00975 Betaine degradation, bacteria, betaine => pyruvate [PATH:pma00260 pma01100]
M00033 Ectoine biosynthesis, aspartate => ectoine [PATH:pma00260 pma01210 pma01230 pma01100 pma01120]
M00919 Ectoine degradation, ectoine => aspartate [PATH:pma00260 pma01100 pma01120]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:pma00270 pma00920 pma01200 pma01230 pma01100 pma01110]
M00338 Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:pma00260 pma00270 pma01230 pma01100]
M00609 Cysteine biosynthesis, methionine => cysteine [PATH:pma00270 pma01230 pma01100]
M00017 Methionine biosynthesis, aspartate => homoserine => methionine [PATH:pma00270 pma01230 pma01100]
M00034 Methionine salvage pathway [PATH:pma00270 pma01100]
M00035 Methionine degradation [PATH:pma00270 pma01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:pma00290 pma00770 pma01210 pma01230 pma01100 pma01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:pma00290 pma01230 pma01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:pma00290 pma01210 pma01230 pma01100 pma01110]
M00036 Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:pma00280 pma01100]

Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:pma00300 pma01230 pma01100]
M00525 Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine [PATH:pma00300 pma01230 pma01100]
M00526 Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine [PATH:pma00300 pma01230 pma01100]
M00527 Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:pma00300 pma01230 pma01100 pma01110]
M00032 Lysine degradation, lysine => saccharopine => acetoacetyl-CoA [PATH:pma00310 pma01210 pma01100]
M00957 Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA [PATH:pma00310 pma01100 pma01120]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:pma00220 pma01210 pma01230 pma01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:pma00220 pma01230 pma01100]
M00029 Urea cycle [PATH:pma00220 pma01230 pma01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:pma00330 pma01230 pma01100]
M00970 Proline degradation, proline => glutamate [PATH:pma00330 pma01100]
M00972 Proline metabolism [PATH:pma00330 pma01100]
M00047 Creatine pathway [PATH:pma00330 pma00260 pma01100]
M00879 Arginine succinyltransferase pathway, arginine => glutamate [PATH:pma00330 pma01100]

Polyamine biosynthesis
M00133 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:pma00330 pma01100]
M00134 Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:pma00330 pma01100]
M00135 GABA biosynthesis, eukaryotes, putrescine => GABA [PATH:pma00330 pma01100]

Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH:pma00340 pma01230 pma01100 pma01110]
M00045 Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:pma00340 pma01100]

Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:pma00400 pma01230 pma01100 pma01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:pma00400 pma01230 pma01100 pma01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:pma00400 pma01230 pma01100 pma01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:pma00400 pma01230 pma01100]
M00040 Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:pma00400 pma01230 pma01100 pma01110]
M00043 Thyroid hormone biosynthesis, tyrosine => triiodothyronine/thyroxine [PATH:pma00350 pma01100]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH:pma00350 pma01100]
M00533 Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:pma00350 pma01100 pma01120]
M00037 Melatonin biosynthesis, animals, tryptophan => serotonin => melatonin [PATH:pma00380 pma01100]
M00038 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate [PATH:pma00380 pma01100]

Other amino acid metabolism
M00027 GABA (gamma-Aminobutyrate) shunt [PATH:pma00250 pma00650 pma01100]
M00118 Glutathione biosynthesis, glutamate => glutathione [PATH:pma00480 pma01240 pma01100]
M00947 D-Arginine racemization, D-arginine => L-arginine [PATH:pma00470 pma01100]
M00948 Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:pma00470 pma01100]

Glycan metabolism
Glycan biosynthesis
M00055 N-glycan precursor biosynthesis [PATH:pma01100]
M00073 N-glycan precursor trimming [PATH:pma01100]
M00075 N-glycan biosynthesis, complex type [PATH:pma01100]
M00872 O-glycan biosynthesis, mannose type (core M3) [PATH:pma01100]
M00065 GPI-anchor biosynthesis, core oligosaccharide [PATH:pma01100]
M00070 Glycosphingolipid biosynthesis, lacto-series, LacCer => Lc4Cer [PATH:pma01100]
M00071 Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer [PATH:pma01100]
M00068 Glycosphingolipid biosynthesis, globo-series, LacCer => Gb4Cer [PATH:pma01100]
M00069 Glycosphingolipid biosynthesis, ganglio series, LacCer => GT3 [PATH:pma01100]

Glycosaminoglycan metabolism
M00057 Glycosaminoglycan biosynthesis, linkage tetrasaccharide [PATH:pma01100]
M00058 Glycosaminoglycan biosynthesis, chondroitin sulfate backbone [PATH:pma01100]
M00059 Glycosaminoglycan biosynthesis, heparan sulfate backbone [PATH:pma01100]
M00076 Dermatan sulfate degradation [PATH:pma01100]
M00077 Chondroitin sulfate degradation [PATH:pma01100]
M00078 Heparan sulfate degradation [PATH:pma01100]
M00079 Keratan sulfate degradation [PATH:pma01100]

Lipopolysaccharide metabolism
M00060 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:pma00540 pma01100]
M00063 CMP-KDO biosynthesis [PATH:pma00540 pma01250 pma01100]
M00064 ADP-L-glycero-D-manno-heptose biosynthesis [PATH:pma00540 pma01250 pma01100]

Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00127 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:pma00730 pma01240 pma01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:pma00730 pma01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pma00740 pma01240 pma01100 pma01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pma00750 pma01240 pma01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:pma00750 pma01240 pma01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pma00760 pma01240 pma01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:pma00770 pma01240 pma01100 pma01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:pma00770 pma01240 pma01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pma00780 pma01240 pma01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pma00780 pma01240 pma01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pma00785 pma01240 pma01100]
M00882 Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:pma00785 pma01240 pma01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:pma00785 pma01240 pma01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:pma00790 pma00670 pma01240 pma01100]
M00841 Tetrahydrofolate biosynthesis, mediated by PTPS, GTP => THF [PATH:pma00790 pma01240 pma01100]
M00842 Tetrahydrobiopterin biosynthesis, GTP => BH4 [PATH:pma00790 pma01240 pma01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pma00790 pma01240 pma01100]
M00140 C1-unit interconversion, prokaryotes [PATH:pma00670 pma01240 pma01100]
M00141 C1-unit interconversion, eukaryotes [PATH:pma00670 pma01240 pma01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pma00860 pma01240 pma01100 pma01110]
M00868 Heme biosynthesis, animals and fungi, glycine => heme [PATH:pma00860 pma01240 pma01100 pma01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pma00860 pma01240 pma01100 pma01110]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:pma00860 pma01240 pma01100]
M00847 Heme biosynthesis, archaea, siroheme => heme [PATH:pma00860 pma01240 pma01100 pma01110]
M00925 Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide [PATH:pma00860 pma01240 pma01100]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pma00860 pma01240 pma01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pma00130 pma01240 pma01100 pma01110]
M00128 Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinol [PATH:pma00130 pma01240 pma01100]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:pma00130 pma01240 pma01100 pma01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
M00095 C5 isoprenoid biosynthesis, mevalonate pathway [PATH:pma00900 pma01100 pma01110]
M00096 C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:pma00900 pma01100 pma01110]
M00364 C10-C20 isoprenoid biosynthesis, bacteria [PATH:pma00900 pma01100 pma01110]
M00367 C10-C20 isoprenoid biosynthesis, non-plant eukaryotes [PATH:pma00900 pma01100 pma01110]

Plant terpenoid biosynthesis
M00097 beta-Carotene biosynthesis, GGAP => beta-carotene [PATH:pma00906 pma01100 pma01110]

Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
M00778 Type II polyketide backbone biosynthesis, acyl-CoA + malonyl-CoA => polyketide [PATH:pma01100 pma01110]

Polyketide sugar unit biosynthesis
M00793 dTDP-L-rhamnose biosynthesis [PATH:pma00521 pma00541 pma01250 pma01100 pma01110]

Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Aromatics degradation
M00551 Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:pma01100 pma01120]
M00568 Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:pma01100 pma01120]
M00878 Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA [PATH:pma00360 pma01100 pma01120]

Gene set
Pathogenicity
Drug resistance
M00627 beta-Lactam resistance, Bla system [PATH:pma01501]
M00745 Imipenem resistance, repression of porin OprD
M00639 Multidrug resistance, efflux pump MexCD-OprJ
M00641 Multidrug resistance, efflux pump MexEF-OprN
M00642 Multidrug resistance, efflux pump MexJK-OprM
M00696 Multidrug resistance, efflux pump AcrEF-TolC
M00700 Multidrug resistance, efflux pump AbcA
M00705 Multidrug resistance, efflux pump MepA

Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00611 Oxygenic photosynthesis in plants and cyanobacteria
M00615 Nitrate assimilation
M00616 Sulfate-sulfur assimilation