KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: pro00010 pro01200 pro01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: pro00010 pro01200 pro01230 pro01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: pro00010 pro00020 pro01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: pro00010 pro00020 pro00620 pro01200 pro01210 pro01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: pro00020 pro01200 pro01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: pro00020 pro01200 pro01210 pro01230 pro01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: pro00020 pro01200 pro01210 pro01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: pro00030 pro01200 pro01100 pro01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: pro00030 pro01200 pro01100 pro01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: pro00030 pro01200 pro01230 pro01100 pro01120]
M00580 Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH: pro00030 pro01200 pro01230 pro01100 pro01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: pro00030 pro00230 pro01200 pro01230 pro01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: pro00030 pro01200 pro01100 pro01120]
Other carbohydrate metabolism
M00014 Glucuronate pathway (uronate pathway) [PATH: pro00040 pro01100]
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH: pro00040 pro00030 pro01100]
M00061 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH: pro00040 pro00030 pro01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH: pro00052 pro01100]
M00129 Ascorbate biosynthesis, animals, glucose-1P => ascorbate [PATH: pro00040 pro01240 pro01100]
M00550 Ascorbate degradation, ascorbate => D-xylulose-5P [PATH: pro01100 pro01120]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH: pro00500 pro01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH: pro00500 pro01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH: pro00520 pro01250 pro01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH: pro00520 pro00052 pro01250 pro01100]
M00892 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH: pro00520 pro01250 pro01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH: pro00520 pro01250 pro01100]
M00761 Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH: pro00520 pro01100]
M00012 Glyoxylate cycle [PATH: pro00630 pro01200 pro01100 pro01110]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH: pro00280 pro00630 pro00640 pro01200 pro01100]
M00130 Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH: pro01100]
M00131 Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol [PATH: pro01100]
M00132 Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH: pro01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
M00598 Anoxygenic photosystem I
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
M00101 Cholesterol biosynthesis, FPP => cholesterol [PATH: pro01100]
M00103 Cholecalciferol biosynthesis [PATH: pro01100]
M00106 Conjugated bile acid biosynthesis, cholate => taurocholate/glycocholate [PATH: pro01100]
M00862 beta-Oxidation, peroxisome, tri/dihydroxycholestanoyl-CoA => choloyl/chenodeoxycholoyl-CoA [PATH: pro01100]
M00107 Steroid hormone biosynthesis, cholesterol => pregnenolone => progesterone [PATH: pro01100]
M00109 C21-Steroid hormone biosynthesis, progesterone => cortisol/cortisone [PATH: pro01100]
M00110 C19/C18-Steroid hormone biosynthesis, pregnenolone => androstenedione => estrone [PATH: pro01100]
M00976 C19-Steroid hormone biosynthesis, pregnenolone => testosterone => dihydrotestosterone [PATH: pro01100]
M00977 C19-Steroid hormone biosynthesis (androgen backdoor pathway), pregnenolone => androsterone => dihydrotestosterone [PATH: pro01100]
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: pro00400 pro01230 pro01100 pro01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: pro00400 pro01230 pro01100 pro01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH: pro00400 pro01230 pro01100 pro01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH: pro00400 pro01230 pro01100]
M00042 Catecholamine biosynthesis, tyrosine => dopamine => noradrenaline => adrenaline [PATH: pro00350 pro01100]
M00043 Thyroid hormone biosynthesis, tyrosine => triiodothyronine/thyroxine [PATH: pro00350 pro01100]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH: pro00350 pro01100]
M00533 Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH: pro00350 pro01100 pro01120]
M00037 Melatonin biosynthesis, animals, tryptophan => serotonin => melatonin [PATH: pro01100]
M00038 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate [PATH: pro01100]
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
M00055 N-glycan precursor biosynthesis [PATH: pro01100]
M00073 N-glycan precursor trimming [PATH: pro01100]
M00075 N-glycan biosynthesis, complex type [PATH: pro01100]
M00056 O-glycan biosynthesis, mucin type core [PATH: pro01100]
M00872 O-glycan biosynthesis, mannose type (core M3) [PATH: pro01100]
M00070 Glycosphingolipid biosynthesis, lacto-series, LacCer => Lc4Cer [PATH: pro01100]
M00071 Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer [PATH: pro01100]
M00068 Glycosphingolipid biosynthesis, globo-series, LacCer => Gb4Cer [PATH: pro01100]
M00069 Glycosphingolipid biosynthesis, ganglio series, LacCer => GT3 [PATH: pro01100]
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00127 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH: pro00730 pro01240 pro01100]
M00896 Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP [PATH: pro00730 pro01240 pro01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH: pro00730 pro01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH: pro00740 pro01240 pro01100 pro01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH: pro00750 pro01240 pro01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH: pro00750 pro01240 pro01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH: pro00760 pro01240 pro01100]
M00912 NAD biosynthesis, tryptophan => quinolinate => NAD [PATH: pro00760 pro01240 pro01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH: pro00770 pro01240 pro01100 pro01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: pro00770 pro01240 pro01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH: pro00780 pro01240 pro01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH: pro00780 pro01240 pro01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH: pro01240 pro01100]
M00882 Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH: pro01240 pro01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH: pro01240 pro01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH: pro00790 pro00670 pro01240 pro01100]
M00842 Tetrahydrobiopterin biosynthesis, GTP => BH4 [PATH: pro00790 pro01240 pro01100]
M00843 L-threo-Tetrahydrobiopterin biosynthesis, GTP => L-threo-BH4 [PATH: pro00790 pro01240 pro01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH: pro00790 pro01240 pro01100]
M00140 C1-unit interconversion, prokaryotes [PATH: pro00670 pro01240 pro01100]
M00141 C1-unit interconversion, eukaryotes [PATH: pro00670 pro01240 pro01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH: pro00860 pro01240 pro01100 pro01110]
M00868 Heme biosynthesis, animals and fungi, glycine => heme [PATH: pro00860 pro01240 pro01100 pro01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH: pro00860 pro01240 pro01100 pro01110]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH: pro00860 pro01240 pro01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH: pro00130 pro01240 pro01100 pro01110]
M00128 Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinol [PATH: pro00130 pro01240 pro01100]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH: pro00130 pro01240 pro01100 pro01110]
M00930 Menaquinone biosynthesis, futalosine pathway [PATH: pro00130 pro01240 pro01100]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
M00675 Carbapenem-3-carboxylate biosynthesis, pyrroline-5-carboxylate + malonyl-CoA => carbapenem-3-carboxylate [PATH:pro01100 pro01110]
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00614 Anoxygenic photosynthesis in green sulfur bacteria
M00616 Sulfate-sulfur assimilation
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