| T number | T05200 |
| Org_code | sphd |
| Name | Rhizorhabdus wittichii DC-6 (Sphingomonas wittichii DC-6) |
| Annotation | yes |
| Taxonomy | TAX: 1283312 |
| Lineage | Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Rhizorhabdus |
| Brite | KEGG organisms [BR:br08601]
KEGG organisms in the NCBI taxonomy [BR:br08610]
KEGG organisms in taxonomic ranks [BR:br08611] |
| Data source | GenBank (Assembly: GCA_000715175.2 Complete Genome)
BioProject: 246557 |
| Comment | Isolated from activated sludge of a wastewater treatment facility of a herbicide manufacturer.
Degrades the chloroacetanilide herbicides alachlor, acetochlor, and butachlor via N-dealkylation.
|
| Chromosome | Circular |
| Sequence | GB: CP021181 |
| Length | 5921052 |
| Plasmid | pDC01; Circular |
| Sequence | GB: CP021182 |
| Length | 199964 |
| Plasmid | pDC02; Circular |
| Sequence | GB: CP021183 |
| Length | 117506 |
| Plasmid | pDC03; Circular |
| Sequence | GB: CP021184 |
| Length | 115498 |
| Plasmid | pDC04; Circular |
| Sequence | GB: CP021185 |
| Length | 95350 |
| Plasmid | pDC05; Circular |
| Sequence | GB: CP021186 |
| Length | 35564 |
| Plasmid | pDC06; Circular |
| Sequence | GB: CP021187 |
| Length | 25502 |
| Plasmid | pDC07; Circular |
| Sequence | GB: CP021188 |
| Length | 24123 |
| Plasmid | pDC08; Circular |
| Sequence | GB: CP021189 |
| Length | 17574 |
| Plasmid | pDC09; Circular |
| Sequence | GB: CP021190 |
| Length | 9585 |
| Plasmid | pDC10; Circular |
| Sequence | GB: CP021191 |
| Length | 6108 |
| Plasmid | pDC11; Circular |
| Sequence | GB: CP021192 |
| Length | 5526 |
| Statistics | Number of nucleotides: 6573352
Number of protein genes: 5999
Number of RNA genes: 58
|
| Created | 2017 |
| Reference | PMID: 24928877 |
| Authors | Chen Q, Wang CH, Deng SK, Wu YD, Li Y, Yao L, Jiang JD, Yan X, He J, Li SP |
| Title | Novel three-component Rieske non-heme iron oxygenase system catalyzing the N-dealkylation of chloroacetanilide herbicides in sphingomonads DC-6 and DC-2. |
| Journal | Appl Environ Microbiol 80:5078-85 (2014)
DOI: 10.1128/AEM.00659-14 |
Rhizorhabdus wittichii DC-6