KEGG   Caenorhabditis elegans (nematode): CELE_W03C9.3
Entry
CELE_W03C9.3      CDS       T00019                                 

Gene name
rab-7
Definition
(RefSeq) RAB family
  KO
K07897  Ras-related protein Rab-7A
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel04137  Mitophagy - animal
cel04140  Autophagy - animal
cel04144  Endocytosis
cel04145  Phagosome
Brite
KEGG Orthology (KO) [BR:cel00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    CELE_W03C9.3 (rab-7)
   04145 Phagosome
    CELE_W03C9.3 (rab-7)
   04140 Autophagy - animal
    CELE_W03C9.3 (rab-7)
   04137 Mitophagy - animal
    CELE_W03C9.3 (rab-7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cel04131]
    CELE_W03C9.3 (rab-7)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cel04147]
    CELE_W03C9.3 (rab-7)
   04031 GTP-binding proteins [BR:cel04031]
    CELE_W03C9.3 (rab-7)
Membrane trafficking [BR:cel04131]
 Endosome - Lysosome transport
  Rab GTPases and associated proteins
   Rab GTPases
    CELE_W03C9.3 (rab-7)
Exosome [BR:cel04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   CELE_W03C9.3 (rab-7)
  Exosomal proteins of other body fluids (saliva and urine)
   CELE_W03C9.3 (rab-7)
  Exosomal proteins of colorectal cancer cells
   CELE_W03C9.3 (rab-7)
  Exosomal proteins of bladder cancer cells
   CELE_W03C9.3 (rab-7)
GTP-binding proteins [BR:cel04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab7/9 [OT]
    CELE_W03C9.3 (rab-7)
SSDB
Motif
Pfam: Ras Roc Arf MMR_HSR1 Gtr1_RagA RsgA_GTPase cobW GTP_EFTU AAA_16 AAA_22 Septin PduV-EutP SRPRB AAA_24 AAA_7 ATPase_2 NTP_transf_9 DAP3 AAA_5 NACHT TniB MCM NTPase_1
Other DBs
NCBI-GeneID: 174834
NCBI-ProteinID: NP_496549
WormBase: WBGene00004271
Ensembl: WBGene00004271
UniProt: Q23146
Position
II:complement(join(11965655..11965741,11966084..11966291,11966442..11966593,11966640..11966705,11966786..11966902))
AA seq 209 aa
MSGTRKKALLKVIILGDSGVGKTSLMNQYVNRRFSNQYKATIGADFLTRDVNIDDRTVTL
QIWDTAGQERFQSLGVAFYRGADCCVLAFDVTNAASFKSLDSWRDEFLIQASPRDPDHFP
FVLLGNKVDLESQRAVSSKRAQSWCQTKGNIPYYEVSAKEALNVEAAFLAIARDALARES
QETNDFPEFPDQIRLNPNQQNQQNSGCNC
NT seq 630 nt   +upstreamnt  +downstreamnt
atgtcgggaaccagaaagaaggcgctgctcaaagtgatcattctcggagattcgggcgtt
ggaaaaacatctttgatgaatcaatatgtaaatcggcgatttagtaatcaatataaggca
acgattggagccgacttcctcacacgcgacgtaaacattgacgacagaaccgtcactctt
cagatctgggatacagccggccaggaacgtttccaatcgctcggagtcgctttttatcgt
ggagccgattgctgtgtgctggcttttgacgtcacaaatgccgcctcgttcaaatcgctt
gactcgtggcgtgacgagtttctgattcaggctagcccccgcgatccagaccatttcccg
tttgtcctgctcggaaacaaggtggatttggagtcacagcgtgccgtttcgtcaaaacgt
gctcaatcttggtgccagacgaagggaaatattccgtattacgaggtttctgccaaggaa
gctctcaacgttgaagccgcatttttggcaattgctcgtgatgcgttggctagagaatct
caggaaaccaacgatttcccagagtttcccgaccaaatccgtctcaacccaaatcaacag
aaccagcagaattcgggatgcaattgttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (23)   
   Pfam (23)   
All databases (68)   

Download RDF
DBGET integrated database retrieval system