KEGG   PATHWAY: smm03018
Entry
smm03018                    Pathway                                
Name
RNA degradation - Schistosoma mansoni
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
smm03018  RNA degradation
smm03018

Other DBs
GO: 0006401
Organism
Schistosoma mansoni [GN:smm]
Gene
Smp_163300  histidine triad (hit) protein member, putative [KO:K12584] [EC:3.6.1.59]
Smp_007540  3'-5' exoribonuclease csl4-related [KO:K07573]
Smp_064260  rrp4, putative [KO:K03679]
Smp_045730  Exosome complex exonuclease RRP43, putative [KO:K12586]
Smp_179010  putative exosome complex exonuclease rrp42 (ribosomal rna processing protein 42) [KO:K12589]
Smp_012110  ribonuclease pH related [KO:K11600]
Smp_056900  ribonuclease pH related [KO:K12590]
Smp_048620  putative exosome complex exonuclease rrp45 (polymyositis/scleroderma autoantigen 1) (ribosomal rna processing protein 45) [KO:K03678]
Smp_131150  polymyositis/scleroderma autoantigen-related [KO:K12591] [EC:3.1.13.-]
Smp_159410  putative nuclear DNA-binding protein [KO:K12592]
Smp_161980  ribonuclease II-related [KO:K18681] [EC:3.1.13.-]
Smp_145600  hypothetical protein [KO:K03514] [EC:2.7.7.19]
Smp_167800  hypothetical protein [KO:K12597]
Smp_120360  helicase, putative [KO:K12598] [EC:5.6.2.6]
Smp_212530  helicase, putative [KO:K12598] [EC:5.6.2.6]
Smp_049520  putative wd repeat protein SL1-17 [KO:K12602]
Smp_172270  carbon catabolite repressor protein, putative [KO:K12603] [EC:3.1.13.4]
Smp_133320  ccr4-not transcription complex, putative [KO:K12604]
Smp_024970  ccr4 not-related [KO:K12605]
Smp_088600  ccr4 not-related [KO:K12580]
Smp_204730  unnamed protein product [KO:K10643] [EC:2.3.2.27]
Smp_021870  putative ccr4-associated factor [KO:K12581]
Smp_145400  putative dynein heavy chain [KO:K12606]
Smp_210680  putative suppression of tumorigenicity [KO:K12606]
Smp_132560  hypothetical protein [KO:K12607]
Smp_152840  putative atp-dependent RNA helicase [KO:K14442] [EC:5.6.2.6]
Smp_076030.1  putative transducer of erbb2 (tob) [KO:K14443]
Smp_024140.1  putative polyadenylate binding protein [KO:K13126]
Smp_130800  putative ubiquitin specific protease 52 / poly(A) ribonuclease subunit pan2 [KO:K12571] [EC:3.1.13.4]
Smp_064020.2  hypothetical protein [KO:K12572]
Smp_165960  dcp1 related [KO:K12610] [EC:3.-.-.-]
Smp_006190  hypothetical protein [KO:K12613] [EC:3.6.1.62]
Smp_211330  DEAD box ATP-dependent RNA helicase, putative [KO:K12614] [EC:5.6.2.7]
Smp_140420  5'-3' exoribonuclease, putative [KO:K12618] [EC:3.1.13.-]
Smp_078640  putative snrnp sm protein [KO:K12622]
Smp_157680  U6 snrna-associated sm-like protein lsm4 [KO:K12623]
Smp_129760  hypothetical protein [KO:K12624]
Smp_094150  small nuclear ribonucleoprotein f (snrnp-f),putative [KO:K12625]
Smp_210830  family S9 non-peptidase homologue (S09 family) [KO:K12626]
Smp_175550  putative lsm1 [KO:K12627]
Smp_024110  phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
Smp_043670.1  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Smp_106130.1  putative heat shock protein 70 (hsp70) [KO:K04043]
Smp_008545  heat shock protein HSP60, putative [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
smm03015  mRNA surveillance pathway
KO pathway
ko03018   

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