Vitis vinifera

Scientific NameVitis vinifera [TAX:29760]
Lineagecellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Viteae; Vitis
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KEGG GENOME:  

Known viruses (50)
Scientific NameArabis mosaic virus [TAX:12271]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Secoviridae; Comovirinae; Nepovirus
RefSeq
Arabis mosaic virus RNA 2, complete sequence.
Arabis mosaic virus RNA 1, complete sequence.
Evidence UniProt
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Scientific NameAustralian grapevine viroid [TAX:190810]
LineageViroids; Pospiviroidae; Apscaviroid
RefSeq
Australian grapevine viroid, complete genome.
Evidence RefSeq
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Scientific NameGrapevine Anatolian ringspot virus [TAX:223769]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Secoviridae; Comovirinae; Nepovirus
RefSeq
Grapevine Anatolian ringspot virus RNA 1, complete genome.
Grapevine Anatolian ringspot virus RNA 2, complete genome.
Evidence RefSeq
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Scientific NameGrapevine asteroid mosaic associated virus [TAX:2169998]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Tymoviridae; Marafivirus
RefSeq
Grapevine asteroid mosaic-associated virus isolate GV30, complete genome.
Evidence RefSeq
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Scientific NameGrapevine berry inner necrosis virus [TAX:81877]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus
RefSeq
Grapevine berry inner necrosis virus, complete genome.
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Scientific NameGrapevine Bulgarian latent virus [TAX:748667]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Secoviridae; Comovirinae; Nepovirus
RefSeq
Grapevine Bulgarian latent virus segment 1, complete genome.
Grapevine Bulgarian latent virus segment 2, complete genome.
Evidence RefSeq
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Scientific NameGrapevine Cabernet Sauvignon reovirus [TAX:1640277]
LineageViruses; dsRNA viruses; Reoviridae; unclassified Reoviridae
RefSeq
Grapevine Cabernet Sauvignon reovirus segment 9, complete sequence.
Grapevine Cabernet Sauvignon reovirus isolate CS-BR p3a gene, complete cds.
Grapevine Cabernet Sauvignon reovirus isolate CS-BR nonstructural protein NSP5 gene, complete cds.
Grapevine Cabernet Sauvignon reovirus isolate CS-BR p10a gene, complete cds.
Grapevine Cabernet Sauvignon reovirus isolate CS-BR structural protein P2 gene, complete cds.
Grapevine Cabernet Sauvignon reovirus isolate CS-BR structural protein P1 gene, partial cds.
Grapevine Cabernet Sauvignon reovirus isolate CS-BR structural protein P4 gene, partial cds.
Grapevine Cabernet Sauvignon reovirus isolate CS-BR putative outer capsid protein P6 gene, partial cds.
Grapevine Cabernet Sauvignon reovirus isolate CS-BR P7 protein gene, complete cds.
Grapevine Cabernet Sauvignon reovirus isolate CS-BR nonstructural protein NSP8 gene, partial cds.
Evidence RefSeq
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Scientific NameGrapevine chrome mosaic virus [TAX:12273]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Secoviridae; Comovirinae; Nepovirus
RefSeq
Grapevine chrome mosaic virus RNA 2, complete sequence.
Grapevine chrome mosaic virus RNA 1, complete sequence.
Evidence UniProt
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Scientific NameGrapevine deformation virus [TAX:233784]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Secoviridae; Comovirinae; Nepovirus
RefSeq
Grapevine deformation virus RNA2, complete genome.
Grapevine deformation virus RNA1, complete genome.
Evidence RefSeq
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Scientific NameGrapevine enamovirus-1 [TAX:1892570]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae; Enamovirus; unclassified Enamovirus
RefSeq
Grapevine enamovirus-1 isolate SE-BR, partial genome.
Evidence RefSeq
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Scientific NameGrapevine endophyte alphaendornavirus [TAX:1249676]
LineageViruses; dsRNA viruses; Endornaviridae; Alphaendornavirus
RefSeq
Grapevine endophyte endornavirus, complete genome.
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Scientific NameGrapevine fabavirus [TAX:1849838]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Secoviridae; Comovirinae; Fabavirus
RefSeq
Grapevine fabavirus isolate BB segment RNA2 polyprotein gene, complete cds.
Grapevine fabavirus isolate NP segment RNA1 polyprotein gene, complete cds.
Evidence RefSeq
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Scientific NameGrapevine fanleaf virus [TAX:12274]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Secoviridae; Comovirinae; Nepovirus
RefSeq
Grapevine fanleaf virus RNA 1, complete sequence.
Grapevine Fanleaf virus (GFLV-F13) RNA2 encoding capsid protein.
Evidence UniProt
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Scientific NameGrapevine fanleaf virus satellite RNA [TAX:141860]
LineageViruses; Satellites; Satellite Nucleic Acids; Single stranded RNA satellites; Large single stranded RNA satellites
RefSeq
Grapevine fanleaf virus satellite RNA, complete genome.
Evidence Literature
   Reference PMID: 2471799
      Authors Fuchs M, Pinck M, Serghini MA, Ravelonandro M, Walter B, Pinck L
      Title The nucleotide sequence of satellite RNA in grapevine fanleaf virus, strain F13.
      Journal J Gen Virol. 1989 Apr;70 ( Pt 4):955-62.
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Scientific NameGrapevine fleck virus [TAX:103722]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Tymoviridae; Maculavirus
RefSeq
Grapevine fleck virus, complete genome.
Evidence UniProt
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Scientific NameGrapevine geminivirus A [TAX:1906317]
LineageViruses; ssDNA viruses; Geminiviridae; unclassified Geminiviridae
RefSeq
Grapevine geminivirus A isolate Tamar, complete genome.
Evidence RefSeq
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Scientific NameGrapevine latent viroid [TAX:1737345]
LineageViroids; unclassified viroids
RefSeq
Grapevine latent viroid, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 25503469
      Authors Zhang Z, Qi S, Tang N, Zhang X, Chen S, Zhu P, Ma L, Cheng J, Xu Y, Lu M, Wang H, Ding SW, Li S, Wu Q
      Title Discovery of replicating circular RNAs by RNA-seq and computational algorithms.
      Journal PLoS Pathog. 2014 Dec;10(12):e1004553.
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Scientific NameGrapevine leafroll-associated virus 1 [TAX:47985]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; Ampelovirus
RefSeq
Grapevine leafroll-associated virus 1, complete genome.
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Scientific NameGrapevine leafroll-associated virus 10 [TAX:367121]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; Ampelovirus; unclassified Ampelovirus
RefSeq
Grapevine leafroll-associated virus 10, complete genome, genomic RNA.
Evidence RefSeq
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Scientific NameGrapevine leafroll-associated virus 13 [TAX:1815581]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; Ampelovirus
RefSeq
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177.
Evidence RefSeq
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Scientific NameGrapevine leafroll-associated virus 2 [TAX:64003]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; Closterovirus
RefSeq
Grapevine leafroll-associated virus 2 isolate 93/955, complete genome.
Evidence Literature
   Reference PMID: 15965606
      Authors Meng B, Li C, Goszczynski DE, Gonsalves D
      Title Genome sequences and structures of two biologically distinct strains of Grapevine leafroll-associated virus 2 and sequence analysis.
      Journal Virus Genes. 2005 Aug;31(1):31-41.
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Scientific NameGrapevine leafroll-associated virus 3 [TAX:55951]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; Ampelovirus
RefSeq
Grapevine leafroll-associated virus 3, complete genome.
Evidence UniProt
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Scientific NameGrapevine leafroll-associated virus 3m [TAX:1263294]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; Ampelovirus; Grapevine leafroll-associated virus 3
GenBank
Grapevine leafroll-associated virus 3m isolate 139, complete genome.
Evidence GenBank

Scientific NameGrapevine leafroll-associated virus 4 [TAX:70177]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; Ampelovirus
RefSeq
Grapevine leafroll-associated virus 4, complete genome.
Evidence Literature
   Reference PMID: 21925555
      Authors Ghanem-Sabanadzovic NA, Sabanadzovic S, Gugerli P, Rowhani A
      Title Genome organization, serology and phylogeny of Grapevine leafroll-associated viruses 4 and 6: taxonomic implications.
      Journal Virus Res. 2012 Jan;163(1):120-8.
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Scientific NameGrapevine leafroll-associated virus 5 [TAX:71032]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; Ampelovirus; unclassified Ampelovirus
RefSeq
Grapevine leafroll-associated virus 5, complete genome.
Evidence RefSeq
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Scientific NameGrapevine leafroll-associated virus 6 [TAX:203168]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; Ampelovirus; unclassified Ampelovirus
RefSeq
Grapevine leafroll-associated virus 6, complete genome.
Evidence Literature
   Reference PMID: 21925556
      Authors Rana S, Bajaj A, Mout R, Rotello VM
      Title Monolayer coated gold nanoparticles for delivery applications.
      Journal Adv Drug Deliv Rev. 2012 Feb;64(2):200-16.
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Scientific NameGrapevine leafroll-associated virus 7 [TAX:217615]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; Velarivirus
RefSeq
Grapevine leafroll-associated virus 7, complete genome.
Evidence UniProt
Evidence Literature
   Reference PMID: 22109709
      Authors Jelkmann W, Mikona C, Turturo C, Navarro B, Rott ME, Menzel W, Saldarelli P, Minafra A, Martelli GP
      Title Molecular characterization and taxonomy of grapevine leafroll-associated virus 7.
      Journal Arch Virol. 2012 Feb;157(2):359-62.
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Scientific NameGrapevine leafroll-associated virus 9 [TAX:184610]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; Ampelovirus; unclassified Ampelovirus
GenBank
Grapevine leafroll associated virus 9 methyltransferase/helicase protein and putative RNA dependent RNA polymerase genes, partial cds; and P10, P5, heat shock protein 70, heat shock protein 90, coat protein, and coat protein duplicate genes, complete cds.
Evidence Literature
   Reference Osman, F., Leutenegger, C., Golino, D., & Rowhani, A. (2007). Real-time RT-PCR (TaqMan®) assays for the detection of Grapevine Leafroll associated viruses 1–5 and 9. Journal of virological methods, 141(1), 22-29.

Scientific NameGrapevine leafroll-associated virus Carn [TAX:659661]
LineageViruses; unclassified viruses
GenBank
Grapevine leafroll-associated virus Carn isolate Carnelian RNA-dependent RNA polymerase, methyltransferase/helicase, p5, HSP70h, p60, CP, and p23 genes, complete cds.
Evidence GenBank

Scientific NameGrapevine Pinot gris virus [TAX:1051792]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus
RefSeq
Grapevine Pinot gris virus complete genome, genomic RNA.
Evidence Literature
   Reference PMID: 22036729
      Authors Giampetruzzi A, Roumi V, Roberto R, Malossini U, Yoshikawa N, La Notte P, Terlizzi F, Credi R, Saldarelli P
      Title A new grapevine virus discovered by deep sequencing of virus- and viroid-derived small RNAs in Cv Pinot gris.
      Journal Virus Res. 2012 Jan;163(1):262-8.
   Comment Grapevine Pinot gris virus (GPGV) in symptomatic field plants of three different cultivars (Pinot gris, Traminer and Pinot noir) was detected by RT-PCR.
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Scientific NameGrapevine red blotch virus [TAX:1381007]
LineageViruses; ssDNA viruses; Geminiviridae; Grablovirus
RefSeq
Grapevine red blotch-associated virus isolate CF214-1, complete genome.
Evidence RefSeq
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Scientific NameGrapevine Red Globe virus [TAX:103723]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Tymoviridae; Maculavirus; unclassified Maculavirus
RefSeq
Grapevine Red Globe virus isolate Graciano-T101, complete genome.
Evidence Other
   Comment host: grapevine cv. Graciano
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Scientific NameGrapevine redleaf-associated virus [TAX:1395525]
LineageViruses; ssDNA viruses; Geminiviridae; Grablovirus; Grapevine red blotch virus; Grapevine geminivirus
GenBank
Grapevine redleaf-associated virus isolate GiGV-WA-MR, complete genome.
Evidence GenBank

Scientific NameGrapevine Roditis leaf discoloration-associated virus [TAX:1471299]
LineageViruses; Ortervirales; Caulimoviridae; Badnavirus
RefSeq
Grapevine roditis leaf discoloration-associated virus complete genome, isolate w4.
Evidence RefSeq
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Scientific NameGrapevine rootstock stem lesion associated virus [TAX:167634]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; Closterovirus; unclassified Closterovirus
RefSeq
Grapevine rootstock stem lesion associated virus, complete genome.
Evidence Literature
   Reference PMID: 21487783
      Authors Alkowni R, Zhang YP, Rowhani A, Uyemoto JK, Minafra A
      Title Biological, molecular, and serological studies of a novel strain of grapevine leafroll-associated virus 2.
      Journal Virus Genes. 2011 Aug;43(1):102-10.
   Comment Based on the comparative sequence data and shared antigens, Grapevine rootstock stem lesion associated virus (GRSLaV) is now considered a strain of Grapevine leafroll associated virus-2 (GLRaV-2) and redesignated as Grapevine leafroll associated virus-2 Redglobe (GLRaV-2RG). Redglobe inoculum grafted onto test plants of Cabernet Sauvignon scions on five rootstocks (1103P, 1616C, 3309C, 5BB, and 5C) developed poorly and a few plants succumbed within 2 years in the field. RT-PCR assays of the Redglobe grapevine and asymptomatic test plants of Cabernet Sauvignon tested positive for GLRaV-2RG.
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Scientific NameGrapevine Rupestris stem pitting virus [TAX:68893]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Quinvirinae; Foveavirus; Grapevine rupestris stem pitting-associated virus
GenBank
Grapevine Rupestris stem pitting virus isolate 3138-07, complete genome.
Evidence GenBank

Scientific NameGrapevine rupestris stem pitting-associated virus [TAX:196400]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Quinvirinae; Foveavirus
RefSeq
Rupestris stem pitting associated virus-1, complete genome.
Evidence Literature
   Reference PMID: 9714258
      Authors Meng B, Pang SZ, Forsline PL, McFerson JR, Gonsalves D
      Title Nucleotide sequence and genome structure of grapevine rupestris stem pitting associated virus-1 reveal similarities to apple stem pitting virus.
      Journal J Gen Virol. 1998 Aug;79 ( Pt 8):2059-69.
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Scientific NameGrapevine rupestris stem pitting-associated virus 1 [TAX:81832]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Quinvirinae; Foveavirus; Grapevine rupestris stem pitting-associated virus
GenBank
Rupestris stem pitting associated virus-1, complete genome.
Evidence Literature
   Reference PMID: 9714258
      Authors Meng B, Pang SZ, Forsline PL, McFerson JR, Gonsalves D
      Title Nucleotide sequence and genome structure of grapevine rupestris stem pitting associated virus-1 reveal similarities to apple stem pitting virus.
      Journal J Gen Virol. 1998 Aug;79 ( Pt 8):2059-69.

Scientific NameGrapevine rupestris vein feathering virus [TAX:204933]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Tymoviridae; Marafivirus; unclassified Marafivirus
RefSeq
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome.
Evidence RefSeq
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Scientific NameGrapevine Syrah virus 1 [TAX:630199]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Tymoviridae; Marafivirus
RefSeq
Grapevine Syrah Virus-1, complete genome.
Evidence RefSeq
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Scientific NameGrapevine vein clearing virus [TAX:1050407]
LineageViruses; Ortervirales; Caulimoviridae; Badnavirus
RefSeq
Grapevine vein-clearing virus, complete genome.
Evidence Literature
   Reference PMID: 21554183
      Authors Zhang Y, Singh K, Kaur R, Qiu W
      Title Association of a novel DNA virus with the grapevine vein-clearing and vine decline syndrome.
      Journal Phytopathology. 2011 Sep;101(9):1081-90.
   Comment Grapevine vein-clearing virus was detected by PCR from six grapevine cultivars (Cabernet Franc, Chardonnay, Chardonel, Corot noir, Vidal Blanc and Riesling).
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Scientific NameGrapevine virus A [TAX:35288]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus
RefSeq
Grapevine virus A, complete genome.
Evidence UniProt
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Scientific NameGrapevine virus D [TAX:51617]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus
RefSeq
Grapevine virus D isolate Dolc capsid protein and putative RNA binding protein genes, complete cds.
Evidence RefSeq
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Scientific NameGrapevine virus E [TAX:516956]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus
RefSeq
Grapevine virus E, complete genome.
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Scientific NameGrapevine virus F [TAX:1221437]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus
RefSeq
Grapevine virus F, complete genome.
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Scientific NameGrapevine virus I [TAX:2052157]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus; unclassified Vitivirus
RefSeq
Grapevine virus I isolate VID499, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 29392493
      Authors Blouin AG, Chooi KM, Warren B, Napier KR, Barrero RA, MacDiarmid RM
      Title Grapevine virus I, a putative new vitivirus detected in co-infection with grapevine virus G in New Zealand.
      Journal Arch Virol. 2018 May;163(5):1371-1374.
   Comment host="Vitis vinifera cv. Chardonnay"
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Scientific NameGrapevine virus K [TAX:2016034]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus; unclassified Vitivirus
RefSeq
Grapevine virus K isolate Jo RNA-dependent RNA polymerase (ORF1), hypothetical protein (ORF2), movement protein (ORF3), coat protein (ORF4), and nucleic acid binding protein (ORF5) genes, complete cds.
Evidence RefSeq
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Scientific NameGrapevine virus T [TAX:2016035]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Quinvirinae; Foveavirus; unclassified Foveavirus
RefSeq
Grapevine virus T isolate Cho replicase (ORF1), TGB1 (ORF2), TGB2 (ORF3), TGB3 (ORF4), and CP (ORF5) genes, complete cds.
Evidence RefSeq
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Scientific NameGrapevine yellow speckle viroid 1 [TAX:12904]
LineageViroids; Pospiviroidae; Apscaviroid
RefSeq
Grapevine yellow speckle viroid 1, complete genome.
Evidence Literature
   Reference PMID: 9721250
      Authors Szychowski JA, Credi R, Reanwarakorn K, Semancik JS
      Title Population diversity in grapevine yellow speckle viroid-1 and the relationship to disease expression.
      Journal Virology. 1998 Sep 1;248(2):432-44.
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Scientific NameGrapevine yellow speckle viroid 2 [TAX:46342]
LineageViroids; Pospiviroidae; Apscaviroid
RefSeq
Grapevine yellow speckle viroid 2, complete genome.
Evidence RefSeq
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