Cucumis sativus

Scientific NameCucumis sativus [TAX:3659]
Lineagecellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Known viruses (34)
Scientific NameAlstroemeria necrotic streak virus [TAX:693450]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus; Orthotospovirus alstroemerinecrosis
RefSeq
Alstroemeria necrotic streak virus isolate San_Vicente3 segment M, complete sequence.
Alstroemeria necrotic streak virus isolate San_Vicente3 segment L, complete sequence.
Alstroemeria necrotic streak virus isolate San_Vicente3 segment S, complete sequence.
Evidence Literature
   Reference Genome characterization of three Alstroemeria necrotic streak orthotospovirus (ANSV) isolates naturally infecting bell pepper (Capsicum annuum) in Antioquia (Colombia), Y Gallo, A Sierra, L Muñoz, M Marín… - Tropical Plant Pathology, 2019 - Springer
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和名アラビスモザイクウイルス
Scientific NameArabis mosaic virus [TAX:12271]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus arabis
RefSeq
Arabis mosaic virus RNA 2, complete sequence.
Arabis mosaic virus RNA 1, complete sequence.
Evidence Literature
   Reference PMID: 15098112
      Authors Wetzel T, Beck A, Wegener U, Krczal G
      Title Complete nucleotide sequence of the RNA 1 of a grapevine isolate of Arabis mosaic virus.
      Journal Arch Virol. 2004 May;149(5):989-95.
Arabis mosaic virus on ornamental plants.,M Samuitiene, M Navalinskiene, E Jackeviciene - biologija, 2008 - elibrary.lt
   Comment Vector: Xiphinema diversicaudatum
Evidence Literature
   Reference PMID: 30781273
      Authors Lockhart BEL
      Title Occurrence of Arabis mosaic virus in Hostas in the United States.
      Journal Plant Dis. 2006 Jun;90(6):834.
Arabis mosaic virus on ornamental plants.,M Samuitiene, M Navalinskiene, E Jackeviciene - biologija, 2008 - elibrary.lt
   Comment Vector: Xiphinema diversicaudatum
Evidence Literature
   Reference PMID: 30786583
      Authors Martin RR, Tzanetakis IE
      Title Characterization and Recent Advances in Detection of Strawberry Viruses.
      Journal Plant Dis. 2006 Apr;90(4):384-396.
Arabis mosaic virus on ornamental plants.,M Samuitiene, M Navalinskiene, E Jackeviciene - biologija, 2008 - elibrary.lt
   Comment Vector: Xiphinema diversicaudatum
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Scientific NameBlackberry virus F [TAX:2560349]
LineageViruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; Badnavirus phirubi
RefSeq
Blackberry Virus F isolate BBV-3X, complete genome.
Evidence Literature
   Reference PMID: 30682310
      Authors Shahid MS, Aboughanem-Sabanadzovic N, Sabanadzovic S, Tzanetakis IE
      Title Genomic Characterization and Population Structure of a Badnavirus Infecting Blackberry.
      Journal Plant Dis. 2017 Jan;101(1):110-115.
   Comment Labolatry host: Rubus, Beta vulgaris, Chenopodium quinoa , Vigna unguiculata, Cucumis melo, Cucumis sativus,Glycine max, Gomphrena globosa, Nicotiana rustica, Nicotiana tabacum, Pisum sativum, Cucurbita pepo, Solanum lycopersicum, Spinacia oleracea
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Scientific NameCucumber Bulgarian latent virus [TAX:2560401]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae; Tombusvirus; Tombusvirus bulgariaense
RefSeq
Cucumber Bulgarian latent virus, complete genome.
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Scientific NameCucumber chlorotic leaf virus [TAX:2593922]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq
Cucumber chlorotic leaf virus isolate CuChLV/Colima, complete sequence.
Cucumber chlorotic leaf virus isolate CuChLV/Colima, complete sequence.
Evidence RefSeq
Evidence Literature
   Reference PMID: 32728488
      Authors Sanchez-Chavez S, Regla-Marquez CF, Cardenas-Conejo ZE, Garcia-Rodriguez DA, Centeno-Leija S, Serrano-Posada H, Liñan-Rico A, Partida-Palacios BL, Cardenas-Conejo Y
      Title First report of begomoviruses infecting <i>Cucumis sativus</i> L. in North America and identification of a proposed new begomovirus species.
      Journal PeerJ. 2020;8:e9245.
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Scientific NameCucumber fruit mottle mosaic virus [TAX:146499]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Tobamovirus
RefSeq
Cucumber fruit mottle mosaic virus, complete genome.
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和名キュウリ緑斑モザイクウイルス
Scientific NameCucumber green mottle mosaic virus [TAX:12235]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Tobamovirus
RefSeq
Cucumber green mottle mosaic virus, complete genome.
Evidence UniProt
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Scientific NameCucumber leaf spot virus [TAX:165432]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae; Aureusvirus; Aureusvirus cucumis
RefSeq
Cucumber leaf spot virus, complete genome.
Evidence Literature
   Reference PMID: 9453144
      Authors Miller JS, Damude H, Robbins MA, Reade RD, Rochon DM
      Title Genome structure of cucumber leaf spot virus: sequence analysis suggests it belongs to a distinct species within the Tombusviridae.
      Journal Virus Res. 1997 Nov;52(1):51-60.
   Comment Cucumis sativus
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和名キュウリ斑紋ウイルス
Scientific NameCucumber mottle virus [TAX:388038]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Tobamovirus
RefSeq
Cucumber mottle virus, complete genome.
Evidence Literature
   Reference Molecular and Serological Characterization of Cucumber mottle virus, a New Cucurbit-Infecting Tobamo-like Virus
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Scientific NameCucumber necrosis virus [TAX:12143]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae; Tombusvirus; Tombusvirus cucumis
RefSeq
Cucumber necrosis virus, complete genome.
Evidence UniProt
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Scientific NameCucumber vein yellowing virus [TAX:137475]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Ipomovirus
RefSeq
Cucumber vein yellowing virus, complete genome.
Evidence RefSeq
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Scientific NameCucumber vein-clearing virus [TAX:1092564]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus
RefSeq
Cucumber vein-clearing virus RNA-dependent RNA polymerase gene, partial cds; and triple gene block protein 1, triple gene block protein 2, triple gene block protein 3, coat protein, and nucleic acid binding protein genes, complete cds.
Evidence RefSeq
Evidence Literature
   Reference PMID: 21956832
      Authors Menzel W, Abang MM, Winter S
      Title Characterization of cucumber vein-clearing virus, a whitefly (Bemisia tabaci G.)-transmitted carlavirus.
      Journal Arch Virol. 2011 Dec;156(12):2309-11.
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Scientific NameCucurbit aphid borne yellows virus associated RNA [TAX:1611875]
LineageViruses; Riboviria; Virus-associated RNAs
RefSeq
Cucurbit aphid borne yellows virus associated RNA RNA-dependent RNA polymerase and putative 25K replicase component genes, complete cds.
Evidence RefSeq
Evidence Literature
   Reference Identification and Comparative Analysis of New and Previously Described Polerovirus-associated RNAs EJ Pellerin - 2014 - search.proquest.com
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和名ウリ類退緑黄化ウイルス
Scientific NameCucurbit chlorotic yellows virus [TAX:558690]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Crinivirus; unclassified Crinivirus
RefSeq
Cucurbit chlorotic yellows virus RNA 1 segment, complete sequence.
Cucurbit chlorotic yellows virus RNA 2 segment, complete sequence.
Evidence Literature
   Reference PMID: 20465411
      Authors Okuda M, Okazaki S, Yamasaki S, Okuda S, Sugiyama M
      Title Host range and complete genome sequence of Cucurbit chlorotic yellows virus, a new member of the genus Crinivirus.
      Journal Phytopathology. 2010 Jun;100(6):560-6.
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Scientific NameCucurbit yellow stunting disorder virus [TAX:51330]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Crinivirus
RefSeq
Cucurbit yellow stunting disorder virus RNA1, complete sequence.
Cucurbit yellow stunting disorder virus RNA2, complete genome.
Evidence Literature
   Reference PMID: 12917477
      Authors Aguilar JM, Franco M, Marco CF, Berdiales B, Rodriguez-Cerezo E, Truniger V, Aranda MA
      Title Further variability within the genus Crinivirus, as revealed by determination of the complete RNA genome sequence of Cucurbit yellow stunting disorder virus.
      Journal J Gen Virol. 2003 Sep;84(Pt 9):2555-64.
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Scientific NameDapple peach fruit disease viroid [TAX:12887]
LineageViruses; Pospiviroidae; Hostuviroid; Hop stunt viroid
GenBank
D13765  
Dapple peach fruit disease viroid genomic RNA from peach dapple fruit, complete sequence.
Evidence Literature
   Reference PMID: 2732717
      Authors Sano T, Hataya T, Terai Y, Shikata E
      Title Hop stunt viroid strains from dapple fruit disease of plum and peach in Japan.
      Journal J Gen Virol. 1989 Jun;70 ( Pt 6):1311-9.
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Scientific NameDapple plum and peach fruit disease viroid [TAX:12886]
LineageViruses; Pospiviroidae; Hostuviroid; Hop stunt viroid
GenBank
D13764  
Dapple plum and peach fruit disease viroid genomic RNA from plum and peach dapple fruits, complete sequence.
Evidence Literature
   Reference PMID: 2732717
      Authors Sano T, Hataya T, Terai Y, Shikata E
      Title Hop stunt viroid strains from dapple fruit disease of plum and peach in Japan.
      Journal J Gen Virol. 1989 Jun;70 ( Pt 6):1311-9.
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Scientific NameGrapevine viroid [TAX:12903]
LineageViruses; Pospiviroidae; Hostuviroid; Hop stunt viroid
GenBank
M35717  
Grapevine viroid grapevine isolate (SHV-g(GV)) complete genome.
Evidence Literature
   Reference Sano, T., Ohshima, K., Hataya, T., Uyeda, I., Shikata, E., Chou, T. G., ... & Okada, Y. (1986). A viroid resembling hop stunt viroid in grapevines from Europe, the United States and Japan. Journal of general virology, 67(8), 1673-1678.
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Scientific NameHop stunt viroid - cucumber [TAX:12902]
LineageViruses; Pospiviroidae; Hostuviroid; Hop stunt viroid
GenBank
X07405  
Cucumber pale fruit viroid (CPFV) RNA.
Evidence Literature
   Reference PMID: 6328420
      Authors Sano T, Uyeda I, Shikata E, Ohno T, Okada Y
      Title Nucleotide sequence of cucumber pale fruit viroid: homology to hop stunt viroid.
      Journal Nucleic Acids Res. 1984 Apr 25;12(8):3427-34.
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和名リンゴモザイクウイルス
Scientific NameIlarvirus ApMV [TAX:12319]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Bromoviridae; Ilarvirus
RefSeq
Apple mosaic virus RNA 1 putative methyltransferase/helicase gene, complete cds.
Apple mosaic virus RNA 2 putative polymerase gene, complete cds.
Apple mosaic virus RNA 3, complete sequence.
Evidence RefSeq
Evidence Literature
   Reference PMID: 10640567
      Authors Shiel PJ, Berger PH
      Title The complete nucleotide sequence of apple mosaic virus (ApMV) RNA 1 and RNA 2: ApMV is more closely related to alfalfa mosaic virus than to other ilarviruses.
      Journal J Gen Virol. 2000 Jan;81(Pt 1):273-8.
   Comment Cucumis sativus L. var. Lemon
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Scientific NameJatropha mosaic India virus-[Lucknow] [TAX:569949]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Jatropha mosaic India virus
RefSeq
Jatropha mosaic India virus-[Lucknow] strain SK-2 segment DNA-A, complete sequence.
Evidence Literature
   Reference Biological Characterization and Complete Genome Sequence of a Possible Strain of Indian cassava mosaic virus from Jatropha curcas in India, SK Snehi, A Srivastava, SK Raj - Journal of Phytopathology, 2012 - Wiley Online Library
   Comment Vector: Bemisia tabaci
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和名キュウリ緑斑モザイクウイルス
Scientific NameKyuri green mottle mosaic virus [TAX:111970]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Tobamovirus
RefSeq
Kyuri green mottle mosaic virus, complete genome.
Evidence Literature
   Reference PMID: 11765913
      Authors Yoon JY, Min BE, Choi SH, Ryu KH
      Title Completion of nucleotide sequence and generation of highly infectious transcripts to cucurbits from full-length cDNA clone of Kyuri green mottle mosaic virus.
      Journal Arch Virol. 2001;146(11):2085-96.
   Comment Generation of biologically active in vitro transcripts of the virus and its infectivity for systemic host plants was confirmed.
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和名メロンえそ斑点ウイルス
Scientific NameMelon necrotic spot virus [TAX:11987]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae; Gammacarmovirus; Gammacarmovirus melonis
RefSeq
Melon necrotic spot virus, genome.
Evidence UniProt
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和名メロン黄化えそウイルス
Scientific NameMelon yellow spot virus [TAX:89471]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus; Orthotospovirus meloflavi
RefSeq
Melon yellow spot virus segment S, complete sequence.
Melon yellow spot virus segment L, complete sequence.
Melon yellow spot virus segment M, complete sequence.
Evidence Literature
   Reference Kato, K., Hanada, K., & Kameya Iwaki, M. (1999). Transmission mode, host range and electron microscopy of a pathogen causing a new disease of melon (Cucumis melo) in Japan. Annals of the Phytopathological Society of Japan (Japan).
Kato, K., Hanada, K., & Kameya Iwaki, M. (1999). Transmission mode, host range and electron microscopy of a pathogen causing a new disease of melon (Cucumis melo) in Japan. Annals of the Phytopathological Society of Japan (Japan).
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和名パパイア奇形葉モザイクウイルス
Scientific NamePapaya leaf distortion mosaic virus [TAX:46917]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus caricae
RefSeq
Papaya leaf-distortion mosaic potyvirus, complete genome.
Evidence Literature
   Reference patents/US7125971
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和名プルヌスえそ輪点ウイルス
Scientific NamePrunus necrotic ringspot virus [TAX:37733]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Bromoviridae; Ilarvirus
RefSeq
Prunus necrotic ringspot virus RNA 1, complete genome.
Prunus necrotic ringspot virus RNA 2, complete genome.
Prunus necrotic ringspot virus RNA 3, complete sequence.
Evidence RefSeq
Evidence Literature
   Reference PMID: 11402868
      Authors Di Terlizzi B, Skrzeczkowski LJ, Mink GI, Scott SW, Zimmerman MT
      Title The RNA 5 of Prunus necrotic ringspot virus is a biologically inactive copy of the 3'-UTR of the genomic RNA 3.
      Journal Arch Virol. 2001;146(4):825-33.
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Scientific NameTobacco necrosis virus A [TAX:12055]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae; Alphanecrovirus; Alphanecrovirus nicotianae
RefSeq
Tobacco necrosis virus A, complete genome.
Evidence UniProt
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和名タバコえそDウイルス
Scientific NameTobacco necrosis virus D [TAX:12056]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae; Betanecrovirus; Betanecrovirus nicotianae
RefSeq
Tobacco necrosis virus D, complete genome.
Evidence UniProt
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和名タバコ輪点ウイルス
Scientific NameTobacco ringspot virus [TAX:12282]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus nicotianae
RefSeq
Tobacco ringspot virus RNA 2, complete sequence.
Tobacco ringspot virus RNA 1, complete sequence.
Evidence UniProt
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Scientific NameTomato leaf curl New Delhi virus 5 [TAX:2560812]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq
Tomato leaf curl New Delhi virus 5 segment DNA-A, complete sequence.
Evidence RefSeq
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Scientific NameTulare apple mosaic virus [TAX:151043]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Bromoviridae; Ilarvirus
RefSeq
Tulare apple mosaic virus RNA1, complete sequence.
Tulare apple mosaic virus RNA2, complete sequence.
Tulare apple mosaic virus RNA3, complete sequence.
Evidence Literature
   Reference PMID: 14551826
      Authors Scott SW, Zimmerman MT, Ge X
      Title Viruses in subgroup 2 of the genus Ilarvirus share both serological relationships and characteristics at the molecular level.
      Journal Arch Virol. 2003 Oct;148(10):2063-75.
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Scientific NameTurnip yellows virus [TAX:131083]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Polerovirus
RefSeq
Turnip yellows virus, complete genome.
Evidence UniProt
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Scientific NameZucchini green mottle mosaic virus [TAX:111418]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Tobamovirus
RefSeq
Zucchini green mottle mosaic virus, complete genome.
Evidence Literature
   Reference PMID: 18943088
      Authors Yoon JY, Min BE, Choi JK, Ryu KH
      Title Genome Structure and Production of Biologically Active In Vitro Transcripts of Cucurbit-Infecting Zucchini green mottle mosaic virus.
      Journal Phytopathology. 2002 Feb;92(2):156-63.
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Scientific NameZucchini lethal chlorosis virus [TAX:83872]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus; Orthotospovirus cucurbichlorosis
RefSeq
Zucchini lethal chlorosis virus isolate ZLCV-SP segment M, complete sequence.
Zucchini lethal chlorosis virus isolate ZLCV-SP segment S, complete sequence.
Zucchini lethal chlorosis virus isolate ZLCV-SP segment L, complete sequence.
Evidence Literature
   Reference PMID: 27388209
      Authors Lima RN, De Oliveira AS, Leastro MO, Blawid R, Nagata T, Resende RO, Melo FL
      Title The complete genome of the tospovirus Zucchini lethal chlorosis virus.
      Journal Virol J. 2016 Jul 7;13:123.
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