KEGG   Homo sapiens (human): 5983
Entry
5983              CDS       T01001                                 
Symbol
RFC3, RFC38
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
hsa  Homo sapiens (human)
Pathway
hsa03030  DNA replication
hsa03410  Base excision repair
hsa03420  Nucleotide excision repair
hsa03430  Mismatch repair
Network
nt06503  Mismatch repair
nt06504  Base excision repair
nt06506  Double-strand break repair
nt06509  DNA replication
  Element
N01432  Mismatch repair
N01436  Long patch BER
N01452  Homologous recombination
N01471  Origin unwinding and elongation
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    5983 (RFC3)
   03410 Base excision repair
    5983 (RFC3)
   03420 Nucleotide excision repair
    5983 (RFC3)
   03430 Mismatch repair
    5983 (RFC3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hsa03032]
    5983 (RFC3)
   03036 Chromosome and associated proteins [BR:hsa03036]
    5983 (RFC3)
   03400 DNA repair and recombination proteins [BR:hsa03400]
    5983 (RFC3)
DNA replication proteins [BR:hsa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    5983 (RFC3)
  DNA Replication Termination Factors
   ELG1-RFC complex
    5983 (RFC3)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    5983 (RFC3)
DNA repair and recombination proteins [BR:hsa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     5983 (RFC3)
  Check point factors
   HRAD17(Rad24)-RFC complex
    5983 (RFC3)
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 AAA_22 AAA_16 ABC_tran AAA_2 zf-HC2 AAA_11 ATPgrasp_ST DUF2247
Other DBs
NCBI-GeneID: 5983
NCBI-ProteinID: NP_002906
OMIM: 600405
HGNC: 9971
Ensembl: ENSG00000133119
UniProt: P40938
Structure
Position
13:33818149..33977377
AA seq 356 aa
MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgagcctctgggtggacaagtatcggccctgctccttgggacggctggactatcacaag
gagcaggcggcccagctgcggaacctggtgcagtgtggtgactttcctcatctgttagtg
tacggaccatcaggtgctggaaaaaagacaagaattatgtgtattctacgtgaactttat
ggtgttggagtggaaaaattgagaattgaacatcagaccatcacaactccatctaaaaaa
aaaattgaaattagcaccattgcaagtaactaccaccttgaagttaatcctagtgatgct
ggaaatagtgaccgagtagtcattcaggagatgttgaaaacagtggcacaatcacaacaa
cttgaaacaaactctcaaagggattttaaagtggtattattgacagaagttgacaaactc
accaaagatgctcagcatgccttgcgaagaaccatggaaaaatatatgtctacctgcaga
ttgatcttgtgctgcaattctacatctaaagtgatcccacctattcgtagtaggtgcttg
gcggttcgtgtgcctgctcccagcattgaagatatttgccacgtgttatctactgtgtgt
aagaaggaaggtctgaatcttccttcacaactggctcatagacttgcagagaagtcttgt
agaaatctcagaaaagccctgcttatgtgtgaagcctgcagagtgcaacaatatcctttt
actgcagatcaagaaatccctgagacagattgggaggtgtatctgagggagactgcaaat
gctattgtcagtcagcaaactccacaaaggctccttgaagttcgtggaaggctgtatgag
cttctaactcattgtattcctcctgagataataatgaagggccttctctcagaactgtta
cataattgtgatggacaactgaaaggggaggtggcacaaatggcagcttactatgagcat
cgtctacagctgggtagcaaagccatttatcacttggaagcgtttgtggccaaattcatg
gcactttataagaagttcatggaggatggattggaaggcatgatgttctga

  All links  
Disease (1)   
   OMIM (1)   
Gene (11)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (4)   
   OC (1)   
Protein sequence (27)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (25)   
DNA sequence (56)   
   RefSeq(nuc) (26)   
   GenBank (15)   
   EMBL (15)   
3D Structure (13)   
   PDB (13)   
Protein domain (13)   
   Pfam (13)   
All databases (121)   

Download RDF
KEGG   Homo sapiens (human): 5985
Entry
5985              CDS       T01001                                 
Symbol
RFC5, RFC36
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
hsa  Homo sapiens (human)
Pathway
hsa03030  DNA replication
hsa03410  Base excision repair
hsa03420  Nucleotide excision repair
hsa03430  Mismatch repair
Network
nt06503  Mismatch repair
nt06504  Base excision repair
nt06506  Double-strand break repair
nt06509  DNA replication
  Element
N01432  Mismatch repair
N01436  Long patch BER
N01452  Homologous recombination
N01471  Origin unwinding and elongation
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    5985 (RFC5)
   03410 Base excision repair
    5985 (RFC5)
   03420 Nucleotide excision repair
    5985 (RFC5)
   03430 Mismatch repair
    5985 (RFC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hsa03032]
    5985 (RFC5)
   03036 Chromosome and associated proteins [BR:hsa03036]
    5985 (RFC5)
   03400 DNA repair and recombination proteins [BR:hsa03400]
    5985 (RFC5)
DNA replication proteins [BR:hsa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    5985 (RFC5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    5985 (RFC5)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    5985 (RFC5)
DNA repair and recombination proteins [BR:hsa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     5985 (RFC5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    5985 (RFC5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_24 AAA_16 AAA_11 AAA_22 AAA_assoc_2 RuvB_N AAA_14 DUF815 DEAD ResIII AAA_5 AAA_19 ATPase_2 TIP49 PhoH nSTAND3 AAA_30 TniB AAA_7 DNAX_ATPase_lid Thioredoxin_6 Mg_chelatase NPHP3_N bpMoxR AAA_25 AAA_3 ABC_tran AAA_28
Other DBs
NCBI-GeneID: 5985
NCBI-ProteinID: NP_031396
OMIM: 600407
HGNC: 9973
Ensembl: ENSG00000111445
UniProt: P40937
Structure
Position
12:118016703..118041448
AA seq 340 aa
METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK
LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
HPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIH
LLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
NT seq 1023 nt   +upstreamnt  +downstreamnt
atggagacctcagcactcaagcagcaggagcagcccgcggcgaccaagatcaggaacctg
ccctgggttgaaaaataccggccacagaccctgaatgatctcatttctcatcaggacatt
ctgagtaccattcagaagtttatcaatgaagaccgactgccacacttgcttctctacggt
cccccagggacaggcaagacatctaccatcctagcctgtgcgaaacagctatataaagac
aaagaatttggctccatggtcttggagctgaatgcttcagatgaccgaggaatagacatc
attcgaggaccgatcctgagctttgctagcacaaggacaatatttaagaaaggctttaag
ctagtgatcttggatgaagcagacgccatgactcaggacgcccagaatgccttgagaaga
gtaattgagaaattcacagaaaataccagattctgcctcatctgtaactatctgtcaaag
atcatccctgccttgcagtcccgctgcacgaggtttcggttcggtcccctgactcctgaa
ctcatggttccccgcctggaacatgtcgtggaagaagagaaagttgatataagtgaagat
ggaatgaaagcactagtcactctttccagtggagacatgcgtagggctctgaacattttg
cagagcaccaatatggcctttgggaaggtgacagaggagactgtctacacctgcaccggg
cacccgctcaagtcagacattgccaacatcctggactggatgttgaatcaagatttcacc
acagcctacagaaatattacagagttgaaaactctgaaggggttggcactgcatgatatc
ctgacagagatacacttgtttgtgcatagagttgactttccatcttcagttcgaatacat
ttattgaccaaaatggcagacattgagtacaggctttctgttggcaccaacgagaagatc
cagctgagctccctcattgctgcatttcaagtcaccagagacctgattgttgcagaggcc
tag

  All links  
Disease (1)   
   OMIM (1)   
Gene (11)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (4)   
   OC (1)   
Protein sequence (8)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (6)   
DNA sequence (38)   
   RefSeq(nuc) (12)   
   GenBank (13)   
   EMBL (13)   
3D Structure (13)   
   PDB (13)   
Protein domain (33)   
   Pfam (33)   
All databases (104)   

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