KEGG   Vibrio campbellii ATCC BAA-1116: M892_14605
Entry
M892_14605        CDS       T02837                                 
Name
(GenBank) exodeoxyribonuclease V subunit alpha
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
vca  Vibrio campbellii ATCC BAA-1116
Pathway
vca03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    M892_14605
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vca03400]
    M892_14605
Enzymes [BR:vca01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     M892_14605
DNA repair and recombination proteins [BR:vca03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     M892_14605
SSDB
Motif
Pfam: AAA_19 AAA_30 UvrD_C_2 SH3_13 Helicase_RecD RecD_N AAA_11 SLFN-g3_helicase UvrD-helicase Viral_helicase1 AAA_22 nSTAND3 AAA_16 CbiA DEAD UvrD_C AAA_28 TrwB_AAD_bind ResIII MukB T2SSE DUF87 AAA_7 SRP54 RNA_helicase ABC_tran NTPase_1 ATPase
Other DBs
NCBI-ProteinID: AGU95501
Position
I:3154841..3157018
AA seq 725 aa
MKTNDLLSEQSSPVATRDLAATPDLLATLESLANKGAIRQLDFQFARFIYSQVEQQENSQ
ELAFIAGVVSSELGKGHICLLLFDGQGQPVDLASKLGLFGESALALNTQLQGVNWVELLQ
ASPLVGAQGEALPMMFDGERLYLHRYWHYEVTLADKLNQLSAAVNLQPQDFTRLSELLNH
LFARQYHFLFNALAKVVEAGTSNQVLPQQLVCDHLDVVTVDSLDWAAIDTAVNQAKQVHD
LQVLDKLVPLSACVNWQKVAAAVALTRRFAVISGGPGTGKTTTVTKLLAALIEQAGQEKN
LTIKLVAPTGKAAARLTESIGKAIQELPVEPELKAKIPTESSTLHRLLGAIPNSAEFRHN
KQNPLHLDILVVDEASMVDLPMMYKVVDSLPKHARLILLGDKDQLASVEAGAVLGDICSF
HAFGFGKEQASAVAKLTGFDTLAYSTNSNASIADSLCMLQKSYRFDARSGIGQLAKAVNA
GSAAKVDDVWSRDFADIEHFALSSQNYNQMMQTLVAEYGRYLKRIGQQEIDQKTGEPETL
THKAKAVLDTFNQCRLLCAIREGDFGVTGLNQRIEKALAARKLIQTQDELWYHGRPVMVT
RNDHGLGLYNGDIGICMRDDSEGEPRLKVFFELPDGSVKSVLPSRVPEHETAYAMTIHKS
QGSEFEYTLMILPPDFSPILTRELIYTGITRAKKRLAMYAEMNVLKRGIKVKTTRASGLV
ERVRN
NT seq 2178 nt   +upstreamnt  +downstreamnt
atgaaaaccaatgatcttctttctgagcaaagcagccctgtggcaacacgagatctagcg
gcaacgccagatctattggcaacgttagaatcgctagcaaataaaggggcgattcgccaa
ttggatttccagttcgcgcgctttatctattcgcaagttgagcaacaagagaacagccaa
gaactggcatttattgctggtgtggtcagcagtgaattaggcaaaggacacatctgtttg
cttctgtttgatggccaagggcaaccagtagatcttgccagtaagctcggtctttttggg
gagtctgcgttagcgcttaatactcaactgcagggcgtcaattgggtggagcttctgcaa
gcgtcgcctttggttggtgctcaaggtgaagccttgccaatgatgtttgatggtgagcgt
ctctacttgcatcgttactggcactatgaagtgacgttggcggacaagctcaatcaactc
agtgcagctgtaaaccttcagcctcaagattttacacgtttgtctgagttgcttaaccat
ttattcgctcgtcagtaccactttctgttcaatgcattagccaaagtggtagaggcagga
accagcaaccaagtgttacctcagcagctagtctgtgaccatttggatgtggttaccgta
gacagcctcgattgggcggccattgatacggcagtcaaccaagcgaaacaagttcacgat
ctacaagtgctggacaagcttgtaccattatcggcttgtgttaactggcagaaggtcgcg
gcagcggtagcactgacgcgtcgttttgcggtgatttccggtggtccgggtacgggtaaa
actactacggtaaccaaactgcttgccgcattgattgagcaagcaggacaagagaaaaac
ctcaccatcaagctggtggcgccaacaggtaaagccgcagcacgtttgacggagtctatt
ggtaaagcgattcaagagttgccagtggagcctgagcttaaagcgaaaattccaaccgag
tcgagcactttgcatcgcctgttgggcgcgatcccgaacagtgcagagtttcgtcacaat
aagcaaaatccgctgcacctcgatattttagtagtggatgaagcctctatggtcgatctg
ccgatgatgtacaaagtcgtcgattcgctaccaaagcatgcgcgtttgattctactggga
gataaagaccagttggcatcggtagaagctggtgcggtgctaggtgatatctgttcgttc
catgcatttggctttggcaaagagcaggcgtctgcggtcgcgaagttgacaggctttgac
actttggcgtacagcaccaatagtaatgcttcgattgccgatagcttatgtatgctgcaa
aagagttaccgattcgatgctcgctctggtatcggccagctagcaaaagcggtcaacgct
ggctcagctgcaaaagtagacgacgtttggagtcgtgattttgctgatatcgagcatttc
gcactgagtagtcaaaattacaatcagatgatgcagactttggttgccgaatatggtcgt
tatttaaaacgcatcggacagcaagagattgaccagaagactggggaaccagaaacgctg
acccacaaagccaaagctgtgctggatacttttaatcaatgccgcttgttgtgtgctatt
cgtgaaggtgattttggtgtgacaggtttaaaccaacgtattgaaaaagcactagcagca
cgtaagctaattcaaacccaagatgaactttggtatcacggcaggccagtgatggtcacg
cgtaacgatcatggcttgggattgtataacggtgatatcggcatttgcatgcgagatgac
agcgaaggcgaaccgcgtctcaaagtgttcttcgaactgccagacggcagcgtgaagtcg
gtgctgccaagccgagtccctgagcatgaaaccgcatatgcgatgaccattcataaatca
cagggcagtgagtttgaatacacgctaatgattttgccgccagatttcagtccaatcctc
actcgcgagctgatctacacaggtattactcgtgcaaagaaacgccttgcgatgtacgcc
gagatgaatgttctcaagcgtggtattaaagtaaaaactactcgagcgagtgggttggtt
gagcgagttagaaattga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (28)   
   Pfam (28)   
All databases (37)   

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