京都大学化学研究所バイオインフォマティクスセンターでは以下のツールも開発しました。これらは各研究室レベルで維持されています。
EnuMol Enumerating Molecular Structures Shimizu et al. (2011) MIMOX A web tool for phage display analysis Huang et al. (2006) HSEpred predict Half-Sphere Exposure from protein sequences Song et al. (2008) PRORATE prediction of protein folding rates Song et al. (2010) SLPFA Subcellular Location Prediction with Frequency and Alignment Tamura & Akutsu (2007) INTREPED an interactive DNA repair prediction server Brown & Akutsu (2009) IPPI Inferring Protein-Protein Interactions for YEAST Hayashida et al. (2003) PURE A Pubmed article recommendation system based on content-based filtering Yoneya & Mamitsuka (2007)
PLOC Prediction of protein localization sites Park & Kanehisa (2003) TSEG Prediction of membrane proteins Kihara et al. (1998) HAMSTER Helpful Abstraction using Minimum Spanning Trees for Expression Relations Wan et al. (2009)
