Chromosome and Associated Proteins - Rattus norvegicus (rat)

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     KO
 Eukaryotic type
   Sister chromatid cohesion proteins
   Meiosis-specific proteins
   Nucleosome assembly factors
   Histone modification proteins
     HATs (histone acetyltransferases)
     HAT complexes
     HDACs (histone deacetylases)
     HDAC complexes
       Sin3A-HDAC complex
       BRAF-HDAC complex
         297893 Hdac1; histone deacetylase 1
         84576 Hdac1l; histone deacetylase 1-like
         84577 Hdac2; histone deacetylase 2
         362825 Hmg20b; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related
         500569 Kdm1a; lysine-specific histone demethylase 1A
         317260 Zmym3; zinc finger MYM-type protein 3
         313598 Zmym4; zinc finger MYM-type protein 4 isoform 2
         305913 Zmym2; zinc finger MYM-type protein 2
         311764 Zfp217; zinc finger protein 217
         307913 Gse1; Gse1 coiled-coil protein
         353256 Gtf2i; general transcription factor II-I isoform 1
K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] 
K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] 
K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] 
K24650 HMG20B; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related 
K11450 KDM1A; [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase [EC:1.14.99.66] 
K24675 ZMYM2_3_4; zinc finger MYM-type protein 2/3/4 
K24675 ZMYM2_3_4; zinc finger MYM-type protein 2/3/4 
K24675 ZMYM2_3_4; zinc finger MYM-type protein 2/3/4 
K27275 ZNF217; zinc finger protein 217 
K27276 GSE1; genetic suppressor element 1 
K03121 TFII-I; transcription initiation factor TFII-I 
       REST complex
         83618 Rest; RE1-silencing transcription factor
         363067 Sin3a; paired amphipathic helix protein Sin3a
         297893 Hdac1; histone deacetylase 1
         84576 Hdac1l; histone deacetylase 1-like
         84577 Hdac2; histone deacetylase 2
         305811 Rcor2; REST corepressor 2
         120096943 Rcor2l2; REST corepressor 2
         684192 Rcor3; REST corepressor 3
         500569 Kdm1a; lysine-specific histone demethylase 1A
         361745 Smarca2; probable global transcription activator SNF2L2
         171379 Smarca4; transcription activator BRG1
         361798 Ehmt2; histone-lysine N-methyltransferase EHMT2
         362078 Ehmt1; histone-lysine N-methyltransferase EHMT1 isoform 1
K09222 REST; RE1-silencing transcription factor 
K11644 SIN3A; paired amphipathic helix protein Sin3a 
K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] 
K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] 
K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] 
K26242 RCOR2_3; REST corepressor 2/3 
K26242 RCOR2_3; REST corepressor 2/3 
K26242 RCOR2_3; REST corepressor 2/3 
K11450 KDM1A; [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase [EC:1.14.99.66] 
K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
K11420 EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMT [EC:2.1.1.355] 
K11420 EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMT [EC:2.1.1.355] 
       SHIP complex
       MiDAC complex
       SMART complex
       Other HDAC associated proteins
     HMTs (histone methyltransferases)
     HMT complexes
     Histone demethylases
       500569 Kdm1a; lysine-specific histone demethylase 1A
       306819 Kdm1b; lysine-specific histone demethylase 2
       304495 Kdm2b; lysine-specific demethylase 2B
       361700 Kdm2a; lysine-specific demethylase 2A
       312440 Kdm3a; lysine-specific demethylase 3A isoform 2
       682469 Kdm3b; lysine-specific demethylase 3B isoform X1
       313539 Kdm4a; lysine-specific demethylase 4A
       689582 Kdm4d; lysine-specific demethylase 4D
       301128 Kdm4b; lysine-specific demethylase 4B isoform 1
       298144 Kdm4c; lysine-specific demethylase 4C
       500944 Kdm4dl2; lysine (K)-specific demethylase 4D-like 2
       312678 Kdm5a; lysine-specific demethylase 5A isoform 1
       317432 Kdm5c; lysine-specific demethylase 5C
       304809 Kdm5b; lysine-specific demethylase 5B
       100312983 Kdm5d; lysine demethylase 5D
       100310845 Uty; lysine-specific demethylase 6A
       103689969 Kdm6a; lysine-specific demethylase 6A isoform X1
       363630 Kdm6b; lysine-specific demethylase 6B isoform 1
       684297 Kdm7a; lysine-specific demethylase 7A isoform X1
       311987 Rsbn1l; lysine-specific demethylase RSBN1L
       310749 Rsbn1; lysine-specific demethylase 9
       60563 Hr; lysine-specific demethylase hairless
       306814 Phf2; lysine-specific demethylase PHF2
       317425 Phf8; histone lysine demethylase PHF8
       299557 Phf8l; uncharacterized protein LOC299557
       314300 Riox1; ribosomal oxygenase 1
       266670 Riox2; ribosomal oxygenase 2
       171120 Jmjd1c; probable JmjC domain-containing histone demethylation protein 2C
       360665 Jmjd6; bifunctional arginine demethylase and lysyl-hydroxylase JMJD6
       100137086 Jmjd7; bifunctional peptidase and (3S)-lysyl hydroxylase JMJD7
       681740 Jarid2; jumonji and AT-rich interaction domain containing 2
       310859 Tet2; methylcytosine dioxygenase TET2 isoform X1
       680576 Tet3; methylcytosine dioxygenase TET3 isoform X3
K11450 KDM1A; [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase [EC:1.14.99.66] 
K19413 KDM1B; lysine-specific histone demethylase 1B [EC:1.-.-.-] 
K10276 FBXL10_11; F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27] 
K10276 FBXL10_11; F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27] 
K15601 KDM3; [histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65] 
K15601 KDM3; [histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65] 
K06709 KDM4; [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69] 
K06709 KDM4; [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69] 
K06709 KDM4; [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69] 
K06709 KDM4; [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69] 
K06709 KDM4; [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69] 
K11446 KDM5; [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67] 
K11446 KDM5; [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67] 
K11446 KDM5; [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67] 
K11446 KDM5; [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67] 
K11447 UTX; lysine-specific demethylase 6A [EC:1.14.11.68] 
K11447 UTX; lysine-specific demethylase 6A [EC:1.14.11.68] 
K11448 KDM6B; lysine-specific demethylase 6B [EC:1.14.11.68] 
K11445 KDM7A; [histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65 1.14.11.-] 
K22610 RSBN1; lysine-specific demethylase 9 [EC:1.14.11.-] 
K22610 RSBN1; lysine-specific demethylase 9 [EC:1.14.11.-] 
K00478 HR; [histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65] 
K19414 PHF2; lysine-specific demethylase PHF2 [EC:1.14.11.-] 
K19415 PHF8; [histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65 1.14.11.-] 
K19415 PHF8; [histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65 1.14.11.-] 
K16914 RIOX1; protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine4/36 demethylase [EC:1.14.11.79 1.14.11.67 1.14.11.69] 
K21760 RIOX2; protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine9 demethylase [EC:1.14.11.79 1.14.11.66] 
K11449 JMJD1C; jumonji domain-containing protein 1C [EC:1.14.11.-] 
K11323 JMJD6; histone arginine demethylase JMJD6 [EC:1.14.11.-] 
K19219 JMJD7; peptidyl-lysine (3S)-dioxygenase / protease [EC:1.14.11.63 3.4.-.-] 
K11478 JARID2; protein Jumonji 
K24309 TET2_3; methylcytosine dioxygenase TET2/3 [EC:1.14.11.80] 
K24309 TET2_3; methylcytosine dioxygenase TET2/3 [EC:1.14.11.80] 
     Polycomb repressive complex (PRC) and associated proteins
     Sir proteins
     Other histone modification proteins
   Chromosome condensation proteins
   Centromeric chromatin formation proteins
   Heterochromatin formation proteins
   Gene silencing
   Centrosome formation proteins
   Sister chromatid separation proteins
   Chromatin remodeling factors
 
 Prokaryotic type

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Last updated: April 10, 2024