Reconstruct tool
The Reconstruct tool "reconstructs" KEGG pathway maps and other network entities from a set of K numbers (KO identifiers).
Usage
Query data
Remarks
Two-column dataset (space or tab separated) with K numbers in the second column, optionally preceded by the user's identifiers in the first column.
This is consistent with the output files of automatic annotation servers, BlastKOALA, GhostKOALA, KofamKOALA and KAAS.
The dataset may contain lists of K numbers for multiple organisms, each list preceded by the comment line starting with # and optional color specification.
Target DB
The dataset may contain lists of K numbers for multiple organisms, each list preceded by the comment line starting with # and optional color specification.
| Target DB | Prefix | Type | Result tab |
| Pathway | map | Reference pathway | Pathway |
| Brite hierarchy | ko | Reference hierarchy | Brite |
| Brite table | br | Reference table | Brite Table |
| Module | M | Reference module | Module |
In the Pathway tab, all global and overview maps of metabolism may be viewed in the module link mode, which treats the map as consisting of modules rather than individual genes.
When multiple gene lists for multiple organisms are given in the input file, each list must be preceded by the # line containing the organism name (or identifier). Default coloring for two organisms is as follows:
See KEGG color codes for more details.
When multiple gene lists for multiple organisms are given in the input file, each list must be preceded by the # line containing the organism name (or identifier). Default coloring for two organisms is as follows:
| org | 1 | 2 | 1+2 | |
| regular maps | ||||
| global/overview maps | ||||
Last updated: July 1, 2021