Pan troglodytes

Scientific NamePan troglodytes [TAX:9598]
Lineagecellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan
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KEGG GENOME:  

Known viruses (46)
Scientific NameChikungunya virus [TAX:37124]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Togaviridae; Alphavirus
RefSeq
Chikungunya virus, complete genome.
DISEASE
H01540  
Chikungunya fever
Evidence UniProt
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Scientific NameChimpanzee adenovirus Y25 [TAX:1123958]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus E
RefSeq
Chimpanzee adenovirus Y25, complete genome.
Evidence RefSeq
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Scientific NameChimpanzee associated porprismacovirus 1 [TAX:2170109]
LineageViruses; ssDNA viruses; Smacoviridae; Porprismacovirus
RefSeq
Chimpanzee associated porprismacovirus 1 isolate DP152, complete genome.
Evidence RefSeq
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Scientific NameChimpanzee associated porprismacovirus 2 [TAX:2170110]
LineageViruses; ssDNA viruses; Smacoviridae; Porprismacovirus
RefSeq
Chimpanzee associated porprismacovirus 2 isolate GM495, complete genome.
Evidence RefSeq
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Scientific NameChimpanzee herpesvirus strain 105640 [TAX:332937]
LineageViruses; dsDNA viruses, no RNA stage; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Simplexvirus; Panine alphaherpesvirus 3
RefSeq
Chimpanzee alpha-1 herpesvirus strain 105640, complete genome.
Evidence RefSeq
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Scientific NameChimpanzee stool associated circular ssDNA virus [TAX:702718]
LineageViruses; ssDNA viruses; Smacoviridae; Porprismacovirus; unclassified Porprismacovirus
GenBank
Chimpanzee stool associated circular ssDNA virus isolate GM510, complete genome.
Evidence GenBank

Scientific NameChimpanzee stool avian-like circovirus Chimp17 [TAX:743290]
LineageViruses; ssDNA viruses; Circoviridae; Circovirus; Chimpanzee associated circovirus 1
RefSeq
Chimpanzee stool avian-like circovirus Chimp17, complete genome.
Evidence RefSeq
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Scientific NameCyclovirus Chimp11 [TAX:742920]
LineageViruses; ssDNA viruses; Circoviridae; Cyclovirus; Chimpanzee associated cyclovirus 1
RefSeq
Cyclovirus Chimp11, complete genome.
Evidence RefSeq
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Scientific NameCyclovirus Chimp12 [TAX:742921]
LineageViruses; ssDNA viruses; Circoviridae; Cyclovirus; unclassified Cyclovirus
GenBank
Cyclovirus Chimp12, complete genome.
Evidence GenBank

Scientific NameGB virus C variant troglodytes [TAX:93986]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Pegivirus; Pegivirus C; GB virus C
GenBank
GB virus C variant troglodytes, complete genome.
Evidence Literature
   Reference PMID: 9700632
      Authors Birkenmeyer LG, Desai SM, Muerhoff AS, Leary TP, Simons JN, Montes CC, Mushahwar IK
      Title Isolation of a GB virus-related genome from a chimpanzee.
      Journal J Med Virol. 1998 Sep;56(1):44-51.
   Comment note="GBV-Ctro"

Scientific NameHepatitis B virus [TAX:10407]
LineageViruses; Retro-transcribing viruses; Hepadnaviridae; Orthohepadnavirus
RefSeq
Hepatitis B virus (strain ayw) genome.
DISEASE
H00412  
Hepatitis B; Hepatitis B virus (HBV) infection
Evidence UniProt
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Scientific NameHepatitis B virus subtype adr [TAX:106820]
LineageViruses; Retro-transcribing viruses; Hepadnaviridae; Orthohepadnavirus; Hepatitis B virus
GenBank
Hepatitis B virus subtype ADR DNA, complete genome, isolate:HBV-115.
Evidence UniProt

Scientific NameHepatovirus A [TAX:12092]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Hepatovirus
RefSeq
Hepatitis A virus, complete genome.
DISEASE
H00411  
Hepatitis A; Hepatitis A virus (HAV) infection
Evidence UniProt
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Scientific NameHuman associated porprismacovirus 2 [TAX:2170114]
LineageViruses; ssDNA viruses; Smacoviridae; Porprismacovirus
RefSeq
Human associated porprismacovirus 2 isolate SF2, complete genome.
Evidence RefSeq
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Scientific NamePan troglodytes verus polyomavirus 8 [TAX:1762023]
LineageViruses; dsDNA viruses, no RNA stage; Polyomaviridae; Betapolyomavirus; Pan troglodytes polyomavirus 8
RefSeq
Pan troglodytes verus polyomavirus 8 isolate Ch-Regina, complete genome.
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Scientific NamePanine betaherpesvirus 2 [TAX:188763]
LineageViruses; dsDNA viruses, no RNA stage; Herpesvirales; Herpesviridae; Betaherpesvirinae; Cytomegalovirus
RefSeq
Panine herpesvirus 2 strain Heberling, complete genome.
Evidence RefSeq
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Scientific NameSalivirus CH [TAX:1330996]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Salivirus; Salivirus A
GenBank
Salivirus CH, complete genome.
Evidence GenBank

Scientific NameSalivirus NG-J1 [TAX:651733]
LineageViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Salivirus; Salivirus A
RefSeq
Salivirus NG-J1, complete genome.
Evidence UniProt
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Scientific NameSimian adenovirus 21 [TAX:198503]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus B; Human adenovirus B2
RefSeq
Simian adenovirus 21, complete genome.
Evidence Literature
   Reference PMID: 16894185
      Authors Roy S, Zhi Y, Kobinger GP, Figueredo J, Calcedo R, Miller JR, Feldmann H, Wilson JM
      Title Generation of an adenoviral vaccine vector based on simian adenovirus 21.
      Journal J Gen Virol. 2006 Sep;87(Pt 9):2477-85.
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Scientific NameSimian adenovirus 25 [TAX:175567]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus E
RefSeq
Simian adenovirus 25, complete genome.
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Scientific NameSimian adenovirus 25.2 [TAX:585082]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus E; Simian adenovirus 25
GenBank
Simian adenovirus 25.2, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian adenovirus 26 [TAX:585060]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus E
GenBank
Simian adenovirus 26, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian adenovirus 27.1 [TAX:585083]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus B
GenBank
Simian adenovirus 27.1, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian adenovirus 28.1 [TAX:585085]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus B
GenBank
Simian adenovirus 28.1, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian adenovirus 29 [TAX:585063]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus B
GenBank
Simian adenovirus 29, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian adenovirus 30 [TAX:585064]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus E
GenBank
Simian adenovirus 30, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian adenovirus 31.1 [TAX:585087]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus C
GenBank
Simian adenovirus 31.1, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian adenovirus 31.2 [TAX:585088]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus C
GenBank
Simian adenovirus 31.2, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian adenovirus 32 [TAX:585066]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus B
GenBank
Simian adenovirus 32, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian adenovirus 33 [TAX:585067]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus B
GenBank
Simian adenovirus 33, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian adenovirus 34 [TAX:585068]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus C
GenBank
Simian adenovirus 34, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian adenovirus 35.1 [TAX:585089]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus B
GenBank
Simian adenovirus 35.1, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian adenovirus 36 [TAX:585070]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus E
GenBank
Simian adenovirus 36, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian adenovirus 37.1 [TAX:585091]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus E; Simian adenovirus 37
GenBank
Simian adenovirus 37.1, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian adenovirus 38 [TAX:585072]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus E
GenBank
Simian adenovirus 38, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian adenovirus 39 [TAX:585073]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus E
GenBank
Simian adenovirus 39, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian adenovirus 40.1 [TAX:585093]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus C
GenBank
Simian adenovirus 40.1, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian adenovirus 40.2 [TAX:585094]
LineageViruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus; Human mastadenovirus C
GenBank
Simian adenovirus 40.2, complete genome.
Evidence Literature
   Reference PMID: 19578438
      Authors Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM
      Title Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.
      Journal PLoS Pathog. 2009 Jul;5(7):e1000503.

Scientific NameSimian foamy virus [TAX:11642]
LineageViruses; Ortervirales; Retroviridae; Spumaretrovirinae; Spumavirus
RefSeq
Simian foamy virus, complete genome.
Evidence UniProt
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Scientific NameSimian immunodeficiency virus [TAX:11723]
LineageViruses; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
RefSeq
Simian immunodeficiency virus, complete genome.
Evidence UniProt
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Scientific NameTorque teno mini virus 4 [TAX:687372]
LineageViruses; ssDNA viruses; Anelloviridae; Betatorquevirus
RefSeq
Torque teno mini virus 4, complete genome.
Evidence Literature
   Reference PMID: 11080484
      Authors Okamoto H, Nishizawa T, Tawara A, Peng Y, Takahashi M, Kishimoto J, Tanaka T, Miyakawa Y, Mayumi M
      Title Species-specific TT viruses in humans and nonhuman primates and their phylogenetic relatedness.
      Journal Virology. 2000 Nov 25;277(2):368-78.
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Scientific NameTorque teno virus 14 [TAX:687353]
LineageViruses; ssDNA viruses; Anelloviridae; Alphatorquevirus
RefSeq
Torque teno virus 14, complete genome.
Evidence RefSeq
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Scientific NameTorque teno virus 2 [TAX:687341]
LineageViruses; ssDNA viruses; Anelloviridae; Alphatorquevirus
RefSeq
Torque teno virus 2, complete genome.
Evidence RefSeq
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Scientific NameTorque teno virus 23 [TAX:687362]
LineageViruses; ssDNA viruses; Anelloviridae; Alphatorquevirus
RefSeq
Torque teno virus 23 ORF2, ORF1 genes, complete cds, isolate: s-TTV CH65-2.
Evidence RefSeq
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Scientific NameTorque teno virus 4 [TAX:687343]
LineageViruses; ssDNA viruses; Anelloviridae; Alphatorquevirus
RefSeq
Torque teno virus 4, complete genome.
Evidence Literature
   Reference PMID: 11080484
      Authors Okamoto H, Nishizawa T, Tawara A, Peng Y, Takahashi M, Kishimoto J, Tanaka T, Miyakawa Y, Mayumi M
      Title Species-specific TT viruses in humans and nonhuman primates and their phylogenetic relatedness.
      Journal Virology. 2000 Nov 25;277(2):368-78.
   Comment isolation_source="chimpanzee"
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Scientific NameWestern chimpanzee simian foamy virus [TAX:2170203]
LineageViruses; Ortervirales; Retroviridae; Spumaretrovirinae; Simiispumavirus
GenBank
U04327  
Western chimpanzee simian foamy virus strain SFVcpz, complete genome.
Evidence GenBank