Raphanus sativus
Species
KNApSAcK Entry
| Organism name | Raphanus sativus |
|---|---|
| Genus | Raphanus |
| Family | Cruciferae |
| Kingdom | Plantae |
NCBI taxonomy
Entry
| Linked NCBI taxonomy name | Raphanus sativus |
|---|---|
| Linked NCBI taxonomy ID | 3726 |
| Linked level | species |
Family
| Family in NCBI taxonomy | Brassicaceae |
|---|---|
| ID | 3700 |
Kingdom (Superkingdom)
| Kingdom (Superkingdom) in NCBI taxonomy | Viridiplantae |
|---|---|
| ID | 33090 |
Plant class
| Plant class | rosids |
|---|---|
| ID | 71275 |
Metabolite list (69)
| KNApSAcK ID | name | ChEMBL link | CTD link |
# of proteins in
ChEMBL interaction / related OMIM / related KEGG DISEASE |
# of genes in
CTD interaction / related diseases |
KCF-S
cluster |
phytochemical
cluster |
figure |
|---|---|---|---|---|---|---|---|---|
C00005556
|
Isorhamnetin 3,7-diglucoside
/ Isorhamnetin 3,7-di-O-beta-glucopyranoside |
No. 1 | No. 15 |
|
||||
|
C00005145
|
Kaempferol 7-alpha-L-arabinoside
|
No. 2 | No. 15 |
|
||||
|
C00006674
|
Cyanidin 3-sophoroside-5-glucoside
|
No. 5 | No. 15 |
|
||||
|
C00006787
|
Pelargonidin 3-(6''-caffeylsophoroside)-5-glucoside
/ Pelargonidin 3-O-(6-O-(trans-caffeyl)-2-O-(beta-D-glucopyranosyl)-beta-D-glucopyranoside)-5-O-(beta-D-glucopyranoside) |
No. 7 | No. 15 |
|
||||
|
C00014833
|
Pelaronidin 3-(2-(6-ferulylglucosyl)glucoside)-5-glucoside
/ Pelargonidin 3-O-[2-O-(6-O-(E)-feruloyl-beta-D-glucopyranosyl)-beta-D-glucopyranoside]-5-O-(beta-D-glucopyranoside) |
No. 7 | No. 15 |
|
||||
|
C00014838
|
Pelargonidin 3-(6-ferulyl-2-glucosylglucoside)-5-glucoside
/ Pelargonidin 3-O-[6-O-(E)-feruloyl-2-O-beta-D-glucopyranosyl-beta-D-glucopyranoside]-5-O-(beta-D-glucopyranoside) |
No. 7 | No. 15 |
|
||||
|
C00014836
|
Pharbitis Red anthocyanin 7
/ Pelargonidin 3-(2-glucosyl-6-p-coumarylglucoside)-5-glucoside / Pelargonidin 3-O-[2-O-beta-D-glucopyranosyl-6-O-(E)-p-coumaroyl-beta-D-glucopyranoside]-5-O-(beta-D-glucopyranoside) |
No. 7 | No. 15 |
|
||||
|
C00001499
|
GA113
/ Gibberellin A113 |
No. 40 | No. 41 |
|
||||
|
C00000009
|
GA9
/ Gibberellin A9 |
No. 40 | No. 41 |
|
||||
|
C00000020
|
GA20
/ Gibberellin A20 |
No. 40 | No. 41 |
|
||||
|
C00000015
|
GA15
/ Gibberellin A15 |
No. 40 | No. 41 |
|
||||
|
C00001505
|
GA114
/ Gibberellin A114 |
No. 40 | No. 41 |
|
||||
|
C00000029
|
GA29
/ Gibberellin A29 |
No. 40 | No. 41 |
|
||||
|
C00000034
|
GA34
/ Gibberellin A34 |
No. 40 | No. 41 |
|
||||
|
C00000040
|
GA40
/ Gibberellin A40 |
No. 40 | No. 41 |
|
||||
|
C00000044
|
GA44
/ Gibberellin A44 |
No. 40 | No. 41 |
|
||||
|
C00000008
|
GA8
/ Gibberellin A8 |
No. 40 | No. 41 |
|
||||
|
C00000077
|
GA77
/ Gibberellin A77 |
No. 40 | No. 41 |
|
||||
|
C00000005
|
GA5
/ Gibberellin A5 |
No. 40 | No. 41 |
|
||||
|
C00000004
|
GA4
/ Gibberellin A4 |
No. 40 | No. 41 |
|
||||
|
C00000001
|
GA1
/ Gibberellin A1 |
C422660
|
No. 40 | No. 41 |
|
|||
|
C00000051
|
GA51
/ Gibberellin A51 |
No. 40 | No. 41 |
|
||||
|
C00007593
|
Glucoberteroin
/ 5-Methylthiopentylglucosinolate |
No. 46 | No. 76 |
|
||||
|
C00007545
|
Glucoraphanin
/ 4-Methylsulphinylbutyl glucosinolate |
No. 46 | No. 76 |
|
||||
|
C00007801
|
5-Hexenyl glucosinolate
|
No. 46 | No. 76 |
|
||||
|
C00007802
|
n-Hexyl glucosinolate
|
No. 46 | No. 76 |
|
||||
|
C00007827
|
3-Methylpentyl glucosinolate
|
No. 46 | No. 76 |
|
||||
|
C00007828
|
4-Methylpentyl glucosinolate
|
No. 46 | No. 76 |
|
||||
|
C00001479
|
Glucoputranjivin
/ isopropyl glucosinolate / 1-Methylethyl glucosinolate |
CHEMBL2208210
|
No. 46 | No. 76 |
|
|||
|
C00001481
|
Glucoraphenin
/ 4-Methylsufinyl-3-butenyl glucosinolate |
No. 46 | No. 76 |
|
||||
|
C00007835
|
4-Methylsulfonyl-3-butenyl glucosinolate
|
No. 46 | No. 76 |
|
||||
|
C00001488
|
Sinigrin
/ Allyl glucosinolate / 2-Phenylethyl glucosinolate |
No. 46 | No. 76 |
|
||||
|
C00007853
|
n-Pentyl glucosinolate
|
No. 46 | No. 76 |
|
||||
|
C00006850
|
Cyanidin 3-(6''-caffeyl-6'''-ferulylsophoroside)-5-glucoside
|
CHEMBL2335917
|
No. 62 | No. 15 |
|
|||
|
C00014841
|
Pelargonidin 3-(2-(2-ferulylglucosyl)-6-ferulylglucoside)-5-glucoside
/ Pelargonidin 3-O-[2-O-(2-(E)-feruloyl-beta-D-glucopyranosyl)-6-O-(E)-feruloyl-beta-D-glucopyranoside]-5-O-(beta-D-glucopyranoside) |
No. 62 | No. 15 |
|
||||
|
C00014840
|
Pelargonidin 3-(2-(6-ferulylglucosyl)-6-p-coumarylglucoside)-5-glucoside
/ Pelargonidin 3-O-[2-O-(6-(E)-feruloyl-beta-D-glucopyranosyl)-6-O-(E)-p-coumaroyl-beta-D-glucopyranoside]-5-O-(beta-D-glucopyranoside) |
No. 62 | No. 15 |
|
||||
|
C00014839
|
Pelargonidin 3-(2-(6-caffeylglucosyl)-6-ferulylglucoside)-5-glucoside
/ Pelargonidin 3-O-[2-O-(6-(E)-caffeoyl-beta-D-glucopyranosyl)-6-O-(E)-feruloyl-beta-D-glucopyranoside]-5-O-(beta-D-glucopyranoside) |
No. 62 | No. 15 |
|
||||
|
C00014837
|
Pelargonidin 3-(2-(6-caffeylglucosyl)-6-p-coumarylglucoside)-5-glucoside
/ Pelargonidin 3-O-[2-O-(6-(E)-caffeoyl-beta-D-glucopyranosyl)-6-O-(E)-p-coumaroyl-beta-D-glucopyranoside]-5-O-(beta-D-glucopyranoside) |
No. 62 | No. 15 |
|
||||
|
C00014025
|
Pelargonidin 3-(2-(6-ferulylglucosyl)-6-ferulylglucoside)-5-glucoside
/ Pelargonidin 3-O-[2-O-(6-(E)-feruloyl-beta-D-glucopyranosyl)-6-O-(E)-feruloyl-beta-D-glucopyranoside]-5-O-(beta-D-glucopyranoside) |
No. 62 | No. 15 |
|
||||
|
C00014834
|
Ipomoea Red anthocyanin 4
/ Pelargonidin 3-(2-(6-caffeylglucosyl)-6-caffeylglucoside)-5-glucoside / Pelargonidin 3-O-[2-O-(6-(E)-caffeoyl-beta-D-glucopyranosyl)-6-O-(E)-caffeoyl-beta-D-glucopyranoside]-5-O-(beta-D-glucopyranoside) |
No. 62 | No. 15 |
|
||||
|
C00014835
|
Pelargonidin 3-(2-(6-ferulylglucosyl)-6-caffeylglucoside)-5-glucoside
/ Pelargonidin 3-O-[2-O-(6-(E)-feruloyl-beta-D-glucopyranosyl)-6-O-(E)-caffeoyl-beta-D-glucopyranoside]-5-O-(beta-D-glucopyranoside) |
No. 62 | No. 15 |
|
||||
|
C00000176
|
Brassinolide
|
CHEMBL563853
CHEMBL1801925 CHEMBL1967970 |
C023623
|
16 / 2 | No. 68 | No. 11 |
|
|
|
C00000181
|
Castasterone
|
C083545
|
No. 68 | No. 11 |
|
|||
|
C00001487
|
Sinalbin
|
C003313
|
No. 158 | No. 77 |
|
|||
|
C00007350
|
Gluconasturtiin
/ 2-Phenylethylglucosinolate |
C443697
|
No. 158 | No. 77 |
|
|||
|
C00000125
|
Glucobrassicin
/ Glucobrassicine / 3-Indolylmethylglucosinolate |
C048308
|
2 / 0 | No. 158 | No. 77 |
|
||
|
C00007805
|
Glucosinalbate
/ 4-Hydroxybenzyl glucosinolate |
No. 158 | No. 77 |
|
||||
|
C00000024
|
GA24
/ Gibberellin A24 |
C120176
|
No. 187 | No. 41 |
|
|||
|
C00044171
|
GA112
/ Gibberellin A112 |
No. 187 | No. 41 |
|
||||
|
C00000012
|
GA12
/ Gibberellin A12 |
C048462
|
No. 187 | No. 41 |
|
|||
|
C00000025
|
GA25
/ Gibberellin A25 |
No. 187 | No. 41 |
|
||||
|
C00001210
|
GA111
/ Gibberellin A111 / 12alpha-Hydroxygibberellin A12 |
No. 187 | No. 41 |
|
||||
|
C00007874
|
GA112
/ Gibberellin A112 |
No. 187 | No. 41 |
|
||||
|
C00007875
|
GA115
/ Gibberellin A115 |
No. 187 | No. 41 |
|
||||
|
C00007254
|
GA116
/ Gibberellin A116 |
No. 187 | No. 41 |
|
||||
|
C00000019
|
GA19
/ Gibberellin A19 |
C120175
|
No. 187 | No. 41 |
|
|||
|
C00000017
|
GA17
/ Gibberellin A17 |
No. 187 | No. 41 |
|
||||
|
C00002718
|
1-Caffeoyl-beta-D-glucose
|
CHEMBL482242
|
No. 1127 | No. 6 |
|
|||
|
C00000100
|
IAA
/ Indole-3-acetic acid |
CHEMBL82411
|
C030737
|
3 / 0 / 0 | 2 / 1 | No. 1432 | No. 4 |
|
|
C00000091
|
trans-Zeatin
|
CHEMBL525239
|
D015026
|
2 / 3 / 2 | 0 / 1 | No. 2879 |
|
|
|
C00002765
|
Phaseolic acid
|
CHEMBL393293
|
No. 3277 |
|
||||
|
C00036441
|
1-Methoxyspirobrassinol methyl ether
/ (-)-1-Methoxyspirobrassinol methyl ether |
CHEMBL466266
CHEMBL466267 |
No. 3637 |
|
||||
|
C00026995
|
Spirobrassinin
/ S-(-)-Spirobrassinin |
No. 3637 |
|
|||||
|
C00036440
|
1-Methoxyspirobrassinin
/ (+)-1-Methoxyspirobrassinin |
No. 3637 |
|
|||||
|
C00000101
|
IAA methyl ester
/ Methyl indole-3-acetate |
No. 4225 |
|
|||||
|
C00027107
|
Brassicanal A
|
No. 5537 |
|
|||||
|
C00000308
|
2-Thioxothiazolidine-4-carboxylic acid
|
No. 6533 |
|
|||||
|
C00000309
|
Raphanusanin
|
No. 8856 |
|
|||||
|
C00001258
|
Methyl mercaptan
|
C005231
|
No. 8885 |
|
Human Protein / Gene in interactions
5 ChEMBL Protein in interactions
| accession | description | class description | KNApSAcK metabolite in interactions |
# of diseases
(OMIM / KEGG) |
|---|---|---|---|---|
| Q16773 | Kynurenine--oxoglutarate transaminase 1 | Enzyme | C00000100 | 0 / 0 |
| P16473 | Thyrotropin receptor | Glycohormone receptor | C00000091 | 3 / 2 |
| P02768 | Serum albumin | Secreted protein | C00000100 | 0 / 0 |
| Q9HBH1 | Peptide deformylase, mitochondrial | Enzyme | C00000100 | 0 / 0 |
| P46063 | ATP-dependent DNA helicase Q1 | Enzyme | C00000091 | 0 / 0 |
20 Gene in CTD interactions
| gene | gene name | gene description | KNApSAcK metabolite in interactions |
|---|---|---|---|
| 596 | BCL2, Bcl-2, PPP1R50 | B-cell CLL/lymphoma 2 |
C00000176
|
| 598 | BCL2L1, BCL-XL/S, BCL2L, BCLX, BCLXL, BCLXS, Bcl-X, PPP1R52, bcl-xL, bcl-xS | BCL2-like 1 |
C00000176
|
| 637 | BID, FP497 | BH3 interacting domain death agonist |
C00000176
|
| 836 | CASP3, CPP32, CPP32B, SCA-1 | caspase 3, apoptosis-related cysteine peptidase (EC:3.4.22.56) |
C00000176
|
| 891 | CCNB1, CCNB | cyclin B1 |
C00000176
|
| 595 | CCND1, BCL1, D11S287E, PRAD1, U21B31 | cyclin D1 |
C00000176
|
| 898 | CCNE1, CCNE | cyclin E1 |
C00000176
|
| 1017 | CDK2, p33(CDK2) | cyclin-dependent kinase 2 (EC:2.7.11.22) |
C00000176
|
| 1019 | CDK4, CMM3, PSK-J3 | cyclin-dependent kinase 4 (EC:2.7.11.22) |
C00000176
|
| 1026 | CDKN1A, CAP20, CDKN1, CIP1, MDA-6, P21, SDI1, WAF1, p21CIP1 | cyclin-dependent kinase inhibitor 1A (p21, Cip1) |
C00000176
|
| 1027 | CDKN1B, CDKN4, KIP1, MEN1B, MEN4, P27KIP1 | cyclin-dependent kinase inhibitor 1B (p27, Kip1) |
C00000176
|
| 2099 | ESR1, ER, ESR, ESRA, ESTRR, Era, NR3A1 | estrogen receptor 1 |
C00000176
|
| 2100 | ESR2, ER-BETA, ESR-BETA, ESRB, ESTRB, Erb, NR3A2 | estrogen receptor 2 (ER beta) |
C00000176
|
| 4193 | MDM2, ACTFS, HDMX, hdm2 | MDM2 oncogene, E3 ubiquitin protein ligase |
C00000176
|
| 5925 | RB1, OSRC, RB, p105-Rb, pRb, pp110 | retinoblastoma 1 |
C00000176
|
| 7157 | TP53, BCC7, LFS1, P53, TRP53 | tumor protein p53 |
C00000176
|
| 196 | AHR, bHLHe76 | aryl hydrocarbon receptor |
C00000100
|
| 405 | ARNT, HIF-1-beta, HIF-1beta, HIF1-beta, HIF1B, HIF1BETA, TANGO, bHLHe2 | aryl hydrocarbon receptor nuclear translocator |
C00000100
|
| 2877 | GPX2, GI-GPx, GPRP, GPRP-2, GPx-2, GPx-GI, GSHPX-GI, GSHPx-2 | glutathione peroxidase 2 (gastrointestinal) (EC:1.11.1.9) |
C00000125
|
| 1728 | NQO1, DHQU, DIA4, DTD, NMOR1, NMORI, QR1 | NAD(P)H dehydrogenase, quinone 1 (EC:1.6.5.2) |
C00000125
|