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KEGG Software

Web Servers

The following web tools are developed and maintained by Kanehisa Laboratories.
KOALA family tools for automatic annotation of genome and metagenome sequences with subsequent KEGG Mapper analysis. [reference]
KEGG MapperKEGG mapping against PATHWAY/BRITE/MODULE databases for biological interpretation of genomic, transcriptomic, metabolomic, and other large-scale data sets. [reference]

The following web servers are developed and maintained by Kyoto University Bioinformatics Center as part of its GenomeNet service.
KofamKOALAAnother KOALA family tool for automatic KO assignment and KEGG mapping. [reference]
KAASThe original KEGG automatic annotation server. [reference]
KEGG OCKEGG OC viewer for browsing and analyzing ortholog clusters (OCs) computationally generated from the KEGG SSDB database. [reference]
Chemical structure similarity search against KEGG COMPOUND, KEGG DRUG, and other databases. SIMCOMP is based on 2D graph representation, while SUBCOMP is based on bit-string representation of chemical structures. [references]
KCaMGlycan structure similarity search against KEGG GLYCAN using tree structure comparison methods. [reference]
E-zymeComputational assignment of EC number sub-subclasses from chemical structure transformation patterns of substrates and products. [references]
PathPredPrediction of microbial biodegradation pathways and plant second metabolite biosynthesis pathways using reaction patterns in KEGG RCLASS. [references]
GENIESGene network prediction from heterogeneous data sets using kernel methods and partially known network information. [references]
DINIESDrug-target interaction network prediction from various types of biological data including chemical structures, drug side effects, amino acid sequences and protein domains. [references]

The following service is also available at GenomeNet.
Sequence similarity search against KEGG GENES, KEGG GENOME, and other databases.

Last updated: December 26, 2023

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